Dsac018784.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010008449.1:839-2314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.2e-05 0.0037 18.3 0.2 2 23 175 196 174 196 0.97 2 11 0.0012 0.1 13.8 2.6 1 23 202 225 202 225 0.90 3 11 0.00012 0.011 16.9 0.4 1 23 233 255 233 255 0.98 4 11 5.7e-07 5.1e-05 24.2 1.7 1 23 261 283 261 283 0.98 5 11 1.6e-06 0.00014 22.8 0.7 1 23 289 311 289 311 0.98 6 11 7.7e-05 0.0069 17.5 3.7 1 23 317 339 317 339 0.97 7 11 6.2e-06 0.00056 20.9 0.3 2 23 346 368 346 368 0.96 8 11 0.0044 0.39 12.0 1.6 5 23 374 392 372 392 0.93 9 11 3.5e-05 0.0031 18.6 3.0 1 22 398 419 398 421 0.91 10 11 0.0023 0.2 12.9 0.8 1 23 427 451 427 452 0.95 11 11 5.3e-06 0.00047 21.2 2.5 1 23 459 482 459 482 0.97
Sequence Information
- Coding Sequence
- ATGGAAAAGGCTATATGCCGAGTCTGTTTAAGCAAGACAGCTGTGATATCTTTATTCGATGTGATAGGCGAACTACAGTACTGTGTTAAACTAAAGAAGTGTGTACAAATTGAAATTCATAAAAATGACGGCTTACCGAATTCCATCTGTGAATATTGTATTAATGAATTAAATCTGGCGTATGATTTCATACTGAGATGTGAGGTTTCTGACAGGACACTGCGATATCTTAAGTATCAAGATGCTGAGCCTAAATTAAATAGATGTGAAGAAAATCAATTCCCAGCAGAAGTTTCCTGTCATGAGACTGAAATTAATTTTGACTTGGAGATCAAAGAAGAATTAGATCATTGTGATGATTTGCTACAAAACTATGATAATGACATTCTGTGTGAAAATATTTCAAAATTAAGTTATAGTGATGAAGATTTATCTTTAACAAAAAGTCTTGAAGAAAAGAAAAGTGTTAGTAAGTCGAAGACTAATAAGAAAAATGTGAAACGCATTAAAAGTGGTCCTTTGAGATGTGAACTTTGTGGGCAAGTTACAATGAGTCAATCCGCATTAGATACTCATATGAGGACCCATACTGGTGAGAGACCTTTCACTTGCAACACTTGTCAATCACAATTCCGCACTAAGGGGTCTTTAAAAAGACACTTTGAAGCGAAGCATTCTGAGAAAAGAGAAAGGAAATTCACATGTGAAACTTGCGGTAGCAGTTTTTACAGGAAAAACGATATAATTATACATATAAGGTTACATACCAATGAAAGGCCATATGTCTGTCCGTACTGCTCTAAATGCTTCAGTCAAATCGCATCACTAATACGGCACAAACGTGTTCATACTGGGGAGAAACCTTTTAGTTGTCCGATTTGTGGAAAGAAATTTAATGACAGGAATTTGGTTAAGAAACACCAGTCTGTACATAGTGATGAGAGGAAATTCACCTGCCACCTATGTAATAAATCTGTGAAGAGTCGCAACACACTTAATACACACATGAGTTTACATTCTAATGAAAAGTCTAATGTGTGTAGTTTTTGTGGAATGGCATTTTCAATGAAAGGAAACTTGACGAGTCACATACGCAGAGCTCATTCTGAAAAGTCAGGACATTGTTCAATATGCTTCAAGTCATTTTCAGATATAGAGGCGCACATGCGTAAACACAATGGAGAAAGACCTTTTACTTGCAAATTGTGTGATAAAAGTTTTGCTTCTCAAAGAAGTTTATCACACCATATAGTGTTTAAGCATAAGAATGCCACAAAATTTAAATGTGCCATAGCTGAATGTAGTAAAGGTTTCCCAACAGCAAAAATGTTGGAATATCATTTATTCAAACATCATAATAAAAACGAATCACCATATATATGCCAGCACTGCTCCCGTGGTTTCTTCCGGCCTAGTGATCTGACAAGGCATCTTAAAATGAGTCATCTAGAAACATTGCCTAAGATATGTCTGTAG
- Protein Sequence
- MEKAICRVCLSKTAVISLFDVIGELQYCVKLKKCVQIEIHKNDGLPNSICEYCINELNLAYDFILRCEVSDRTLRYLKYQDAEPKLNRCEENQFPAEVSCHETEINFDLEIKEELDHCDDLLQNYDNDILCENISKLSYSDEDLSLTKSLEEKKSVSKSKTNKKNVKRIKSGPLRCELCGQVTMSQSALDTHMRTHTGERPFTCNTCQSQFRTKGSLKRHFEAKHSEKRERKFTCETCGSSFYRKNDIIIHIRLHTNERPYVCPYCSKCFSQIASLIRHKRVHTGEKPFSCPICGKKFNDRNLVKKHQSVHSDERKFTCHLCNKSVKSRNTLNTHMSLHSNEKSNVCSFCGMAFSMKGNLTSHIRRAHSEKSGHCSICFKSFSDIEAHMRKHNGERPFTCKLCDKSFASQRSLSHHIVFKHKNATKFKCAIAECSKGFPTAKMLEYHLFKHHNKNESPYICQHCSRGFFRPSDLTRHLKMSHLETLPKICL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -