Dsac023988.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- zfh1
- Assembly
- GCA_014843785.1
- Location
- JACGTY010000229.1:19043-22263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.2 18 6.7 0.4 1 23 66 89 66 89 0.95 2 17 0.072 6.4 8.1 0.1 1 23 160 182 160 182 0.96 3 17 0.0003 0.027 15.6 0.2 1 23 186 208 186 208 0.98 4 17 0.00011 0.0097 17.0 1.1 1 23 213 236 213 236 0.96 5 17 0.0061 0.54 11.5 0.4 2 23 243 265 243 265 0.93 6 17 0.024 2.1 9.6 6.3 1 23 272 295 272 295 0.96 7 17 4.3e-05 0.0038 18.3 4.9 2 23 302 323 301 323 0.97 8 17 0.35 31 6.0 0.8 1 23 451 473 451 473 0.95 9 17 0.049 4.4 8.7 0.4 2 23 499 520 498 520 0.97 10 17 0.074 6.6 8.1 0.5 1 23 542 564 542 564 0.98 11 17 3.8e-05 0.0033 18.5 1.4 1 23 568 590 568 590 0.99 12 17 1.6e-05 0.0014 19.6 0.4 1 23 595 618 595 618 0.96 13 17 4.6e-05 0.0041 18.2 0.5 2 23 625 647 625 647 0.97 14 17 9.6e-05 0.0086 17.2 1.4 1 23 654 677 654 677 0.98 15 17 0.00072 0.064 14.4 1.3 2 23 684 705 683 705 0.96 16 17 1.1e-06 0.0001 23.3 1.8 1 23 711 733 711 733 0.98 17 17 0.038 3.4 9.0 0.1 2 16 738 752 738 754 0.84
Sequence Information
- Coding Sequence
- ATGCCAACTGATGCGCCTTTGAGGAGTCCCTCCCCTTTATTTACGGAGCCTGAATCTCCGTTACCCCTCACAGGAAAACCAACGCCGTTGAAAATCCGTCAGCCACCAAAGCAAAAAAATCTTGACGTCCGACAAAACGCCCTGACCATCTTCGAGTTCTCAACAGTGTATCCTTTCATTTACGGGAACAACAAATTTAAATGCTTCATCTGCTCTCAGCCGTTTCTAGAAATATCCTTACTTAGCTTGCATATGAAAGAATCTCATACATTCGCACCATTAAAAAGGTTGGTGAACAACAGAAGAGAAAACATTTTAAAAGTGGACGTGAGTGATTTAACATGCAAAATATGTTACGGAAAACAAATCAGCTTGGCCGACATGAAATCTCATCTGAAATTAGTGCACCAAAAGCCGATCGACCCCGAAATGAAAGATAACATTATACCGTTCATGTTGGAGGCGTCTGATAATGGGTATAAATGTGTGATATGCAATCAGAACTTCATCAAAGTACGAATACTTGTGATACATATGAGTGTACACTTCAATAATTATAGTTGCGAAATTTGCGGTTCTGGTTTTATGACCTTAAGACTGTTAAAGAAGCATTTGGAGGTGCACGAAAGTGGTAACTTCCCTTGCGAACGATGCAACAAGTCGTTTAGTACATCGTATAAGAGAAATCTTCATATAAGAGGTGTGCATATGAAGCAATACCCCCGACGATGCCCGATGTGCCCGGAAAGATTTAACTCTAACTATAAGAGGACTATACATCTTCAGGACGTGCACAATCAGTCGACAAGGGTGCATAAATGCGAGACTTGTGGAAGGGCATTCAATCTGAAATACCATTTGATATGCCACACGCGATCAGTACATTTACAAGAGAGGAATCAGCAGTGCGACATATGTCATCAGAGGTTTTGTAATAAGGAGACATTGAAAAGACATATGGTAGTCCACACAGGAATCCTTCAACGAAGTGATACATCAACGAAAATAAAAGATGAAGATGGCCAGGAAATCGCCTTGACTGTCCTCAAGAATACAATACCCCTTCATGATCTTAAAGAGCATATCGAGGAGACAAAAATAATAAAAAAACAAAGCAAGCATGTGATGAACAAACTCAAATTGCAACCTAAGGAACGGATGACTAATGTCAAATTCTTAAAGGAACCTATATCTCTTGAGAATGTGAAAGATTCTAAAATGAAAAATGCAAATTTCAATGTAAAACCAGTAAGAACTAGGAAAGTCAGTTTTAAAGTGGCATGGAAACGAAATGCACTGAACATATTTGAAAATTCATTAGTATACCCTTTTATACATTCGGGTAACAAATATAAATGTTTCGTATGCTCCAAATTATTTCTAGACGCGAACTTATTGAGAGATCATAATTCATCACATACAATCAAAGAACTAAAACAAGAAATGAACAATAGAGTCAGAGATACTAATATCAAAGTAGACATCAGTAATATGCAATGCAAATTATGTCAAATTCGCTTACCAGATTTCAAAGCTTTGAAGTCACATTTGAAAGGACATAGCATAAACGTCGATTTGGATATCCAAGACAATTTGATACCTTTCAAATTGGGACAGGATGCATTCGAATGCCAAATCTGCAGTGAAAAATATTTGAAATTAAGATTACTCATAATCCATATGAGCAAACATTTTAATAATTACAGTTGTGAATTGTGTGGTTCGGTTTTTATATCTCATAATTTGCTCAAGAGACATTTGCAAACGCACGAAATGGGCAGCTTTCCTTGTGAGAAATGCGATAAGGTTTTTAGTAACAACGCTAAAAGAACTTTGCATATGCGAGGGGTACATCTAAAACAACTGCCTAGGAGATGCCCGATTTGCCCGGAAAGATTTAATTCGAATTACCAAAGGACCAAACATTTGAGGATAGTCCATAACCAAACCAATGGACTGTTTAAATGTGAAACTTGTGGGAGAGAATATGATTTGAAGTATCACTTATTGCTGCACATAAGGTCTGTGCATTTGCAAGAAAGGTACCAGGAGTGTCCTATTTGCCCATCTAGGTTCTTTTCGAAGTATTGTTTATCTCGCCATATGGTTATACACACTGGTGAGAAGAATTTCAAGTGCAATATTTGTGGGAAAGCGTACGCTAGAAGAAAAAACTTGAAGGAACATTTTAAGTCACATGATCTTGGACGCGAGTGTACGGACTGCGGGAAAAAATTTAACGATGACGCTTCTCTTTCGGCAAATGTAACTGAAATTCATAAAGAAAGAACATAA
- Protein Sequence
- MPTDAPLRSPSPLFTEPESPLPLTGKPTPLKIRQPPKQKNLDVRQNALTIFEFSTVYPFIYGNNKFKCFICSQPFLEISLLSLHMKESHTFAPLKRLVNNRRENILKVDVSDLTCKICYGKQISLADMKSHLKLVHQKPIDPEMKDNIIPFMLEASDNGYKCVICNQNFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCERCNKSFSTSYKRNLHIRGVHMKQYPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDICHQRFCNKETLKRHMVVHTGILQRSDTSTKIKDEDGQEIALTVLKNTIPLHDLKEHIEETKIIKKQSKHVMNKLKLQPKERMTNVKFLKEPISLENVKDSKMKNANFNVKPVRTRKVSFKVAWKRNALNIFENSLVYPFIHSGNKYKCFVCSKLFLDANLLRDHNSSHTIKELKQEMNNRVRDTNIKVDISNMQCKLCQIRLPDFKALKSHLKGHSINVDLDIQDNLIPFKLGQDAFECQICSEKYLKLRLLIIHMSKHFNNYSCELCGSVFISHNLLKRHLQTHEMGSFPCEKCDKVFSNNAKRTLHMRGVHLKQLPRRCPICPERFNSNYQRTKHLRIVHNQTNGLFKCETCGREYDLKYHLLLHIRSVHLQERYQECPICPSRFFSKYCLSRHMVIHTGEKNFKCNICGKAYARRKNLKEHFKSHDLGRECTDCGKKFNDDASLSANVTEIHKERT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -