Dsac029155.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010004543.1:18202-20625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.053 4.7 8.6 0.2 1 23 51 73 51 73 0.96 2 18 0.011 0.97 10.7 0.0 2 23 104 126 103 126 0.94 3 18 0.0043 0.38 12.0 2.2 2 23 149 170 148 171 0.94 4 18 0.0024 0.21 12.8 1.5 1 23 176 199 176 199 0.95 5 18 0.093 8.3 7.8 1.2 1 23 204 227 204 227 0.94 6 18 0.0024 0.22 12.8 1.1 2 23 233 255 232 255 0.93 7 18 0.00016 0.015 16.5 0.1 2 23 263 285 262 285 0.97 8 18 0.00066 0.059 14.6 0.1 2 23 292 313 291 313 0.97 9 18 5e-07 4.5e-05 24.4 1.3 1 23 319 341 319 341 0.97 10 18 2.2e-06 0.00019 22.4 2.1 1 23 347 370 347 370 0.97 11 18 0.72 64 5.0 0.3 2 23 528 550 527 550 0.96 12 18 0.0005 0.045 14.9 0.5 1 23 555 578 555 578 0.95 13 18 0.0012 0.1 13.8 1.7 1 23 581 604 581 604 0.96 14 18 0.02 1.8 9.9 0.6 1 23 610 633 610 633 0.94 15 18 0.00089 0.079 14.1 0.2 2 23 641 663 640 663 0.95 16 18 0.21 19 6.7 0.4 1 23 668 690 668 690 0.97 17 18 1.3e-05 0.0012 19.9 0.5 1 23 696 718 696 718 0.98 18 18 0.0095 0.85 10.9 0.3 2 23 725 747 724 747 0.93
Sequence Information
- Coding Sequence
- ATGAATTTCTTTGCAGGTGCAAAAATCAGCACTGTGGAGGACAAAGTTAAGAAACTGGATATGGCACATAAGTTACTTGTTAAACGGAGAAATATCGAATACGTGCTCCTATATAGTAACGCTACGCCATTCTTATGGTACAAGAGCAAATACAGGTGTTTCTATTGCACTGAACCTATGAAAGATCCTGTATCGCTTAGAGAGCATACCGCTGAACACGTAGCTGATAATTTAGAATTAATCGTTCATGATAGAACCAAGAATAATAGGAATAAGGATGCAGCTGTTAAAATAGATGTAACAGATATTATGTGCACTCTCTGTCCTCAAGCGGTGACCAATTTAGAAGAGCTGATACATCATTTAATTATAGCTCATGACGCAGAATATGATGTAAGCGTACCGAATTGTCTGCTTCCCTTCAAATTAGACAAAGATCAACTCACTTGTCCGACTTGTAATATGAAATTTGTATTCTTTGAATATCTACTAAGGCATGCTAATAAGCATCACTTGTCTCACGACTATATTTGTGACGTTTGCGGTACCAGTTTTCAAGGAGAGAACCATTTGAAAATGCACAACAGATATTATCATAGGCAAGGTGGTTACACTTGTGAACATTGTGGTCTCAGCATGACCACTTTATCTAAAAAGATCCTACACGAGAGGAACGTGCATTCTGTTAATTTGTCCACTTGCCCTCATTGTCCGGAGACGTTTAAAAGTTTGTATTCTAAGAAACTGCACTTGGCAAACGTGCATGGAGTGGAGGAGTTAAAAATAAAATGTCCATACTGCCCCAAAGTCTATCCCCAAGAGAGTATAATGTCCAGGCATATGAGGAGGGTACATCTGAGAGAAAAGAATGTAGAATGTGAAGTTTGCGGCGAGAAGTTCTTTGGACCGTACGATGTCAAACTTCACATGATGAAACATAACGGAGAAAAGAAATTTGTGTGCAGCGTTTGTGGAAAGAAGTTCTCGAAAAAGAGCAACTTGAACTCTCATTCCAATATTCATTCTGCGGAGAAACGATTCGTTTGCACGATCTGTAACAAGTCATTCGCTCAACAGACTTATTATAAGATGCATATGCGGAATACACATTTACAAGTCGATCAGACGAATGTCCAGGACGTTCAAGTTGAGATGGTGAACTTTATCGGAAAAAGTGCCGGAGGAAAGCCTCGCGTACTGAACAGATCTCAACGCGTGAACATACTGAGAAAGAACGTGGTGGCCGTCCTCCGTTACGGGAACGTCACACCTTTTAAATGGCGCACCAAAGGATTCAGTTGCTTCTACTGCTCTACACAGATTAAGGATTGTCTCGCCATAGCAGAACACAACAGAACTAAACACAGCACAGTAGACCTAGACAATGTCTTGCAGGGAATAATATCTAAAGATTTACCTGTCAAAATTGATGTTACCGAGATCGCTTGCAAATTTTGTCCAACTATCGTTATAGATACTTGCGAAGGTCTGATCACTCACATTATGACGGTACACGGCGTTGATTACGATGATTCCGCCGGTGTTTGCATTATGCCATTCTTCCTAGACAACCGTCTGATGCAATGCGTTCTTTGCGAAAGTCAGTTCGATAATTTCACATCCATCGCGAATCATATGAACAAGGAACATATCGGCCACTCGCACATCTGTCAGATATGCGGTTTAAGCTTCATAAATATCGTAAGACTAAACAGACATATACAGTACAGTCACATCGGCTTCAGATGTACTCTTTGCGATAAAATGTTTGACGCTGCCCACAAATTAGAGAATCACAAAATACGGATGCACGGTCAGGTGAAGAGTCATAACTGCAGTCTATGCAGTGCTAGTCTTGAAAATAACTACCTATTGAAGGTGCATATGGGTAAAGTGCATAATGTTGAGAAATATAGGATCGAATGTGAATATTGCCCAAAAGTATGCAACACTAAAGGAGCAATGGTAGCACATGTGCAATCGATGCATTCCGATTTAAGATATGAATGTGATCTTTGCGATTATACCACCGGCATTAAGTGGTTGATAAAGTTGCATAAACGCAAACATTTTGGTGAGAGAGATTACAGTTGTAGTATATGTGCGAGGAAATTTGGCAGGTCAAGCAATGTGCGTGTACATATGAAAGTTCATACGGGACAAATCGGCAAAGTCTGCAGGAGGTGTAGACAAGGTTTTACCGATCTCGAAGCTCTGGAGAGGCATACGAACGAGGTTCATTTATTAGATGACGCTTGA
- Protein Sequence
- MNFFAGAKISTVEDKVKKLDMAHKLLVKRRNIEYVLLYSNATPFLWYKSKYRCFYCTEPMKDPVSLREHTAEHVADNLELIVHDRTKNNRNKDAAVKIDVTDIMCTLCPQAVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQLTCPTCNMKFVFFEYLLRHANKHHLSHDYICDVCGTSFQGENHLKMHNRYYHRQGGYTCEHCGLSMTTLSKKILHERNVHSVNLSTCPHCPETFKSLYSKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGEKFFGPYDVKLHMMKHNGEKKFVCSVCGKKFSKKSNLNSHSNIHSAEKRFVCTICNKSFAQQTYYKMHMRNTHLQVDQTNVQDVQVEMVNFIGKSAGGKPRVLNRSQRVNILRKNVVAVLRYGNVTPFKWRTKGFSCFYCSTQIKDCLAIAEHNRTKHSTVDLDNVLQGIISKDLPVKIDVTEIACKFCPTIVIDTCEGLITHIMTVHGVDYDDSAGVCIMPFFLDNRLMQCVLCESQFDNFTSIANHMNKEHIGHSHICQICGLSFINIVRLNRHIQYSHIGFRCTLCDKMFDAAHKLENHKIRMHGQVKSHNCSLCSASLENNYLLKVHMGKVHNVEKYRIECEYCPKVCNTKGAMVAHVQSMHSDLRYECDLCDYTTGIKWLIKLHKRKHFGERDYSCSICARKFGRSSNVRVHMKVHTGQIGKVCRRCRQGFTDLEALERHTNEVHLLDDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382927;
- 90% Identity
- -
- 80% Identity
- -