Basic Information

Insect: Diatraea saccharalis
Gene Symbol: -
Assembly: GCA_014843785.1
Location: JACGTY010004578.1:14661-17898[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0063 0.56 11.5 0.4 3 23 2 23 1 23 0.94

2 18 5.7 5.1e+02 2.2 0.3 2 10 32 40 32 46 0.85

3 18 0.072 6.4 8.1 4.0 3 23 60 81 59 81 0.95

4 18 3.8e-05 0.0034 18.5 0.4 2 23 88 109 87 109 0.97

5 18 0.00099 0.088 14.0 0.3 1 23 115 137 115 137 0.97

6 18 9.6e-05 0.0085 17.2 2.4 1 23 157 180 157 180 0.97

7 18 0.00022 0.019 16.1 0.5 2 23 216 238 216 238 0.94

8 18 4.7e-05 0.0042 18.2 2.6 1 23 244 266 244 266 0.97

9 18 6.5e-06 0.00058 20.9 2.1 1 23 272 294 272 294 0.98

10 18 2.6e-05 0.0023 19.0 1.2 1 23 300 323 300 323 0.96

11 18 0.0073 0.65 11.3 0.2 1 23 344 367 344 367 0.96

12 18 0.018 1.6 10.0 3.5 2 23 374 396 373 396 0.94

13 18 3.5e-06 0.00031 21.7 0.5 1 23 404 427 404 427 0.95

14 18 0.058 5.1 8.4 1.5 2 17 431 446 430 447 0.92

15 18 0.083 7.4 7.9 0.1 2 23 458 480 458 480 0.95

16 18 1.3e-06 0.00012 23.1 0.4 3 23 488 508 487 508 0.98

17 18 0.0001 0.0091 17.1 3.1 1 23 514 536 514 536 0.98

18 18 0.11 10 7.5 2.7 1 21 542 562 542 565 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0063	0.56	11.5	0.4	3	23	2	23	1	23	0.94
2	18	5.7	5.1e+02	2.2	0.3	2	10	32	40	32	46	0.85
3	18	0.072	6.4	8.1	4.0	3	23	60	81	59	81	0.95
4	18	3.8e-05	0.0034	18.5	0.4	2	23	88	109	87	109	0.97
5	18	0.00099	0.088	14.0	0.3	1	23	115	137	115	137	0.97
6	18	9.6e-05	0.0085	17.2	2.4	1	23	157	180	157	180	0.97
7	18	0.00022	0.019	16.1	0.5	2	23	216	238	216	238	0.94
8	18	4.7e-05	0.0042	18.2	2.6	1	23	244	266	244	266	0.97
9	18	6.5e-06	0.00058	20.9	2.1	1	23	272	294	272	294	0.98
10	18	2.6e-05	0.0023	19.0	1.2	1	23	300	323	300	323	0.96
11	18	0.0073	0.65	11.3	0.2	1	23	344	367	344	367	0.96
12	18	0.018	1.6	10.0	3.5	2	23	374	396	373	396	0.94
13	18	3.5e-06	0.00031	21.7	0.5	1	23	404	427	404	427	0.95
14	18	0.058	5.1	8.4	1.5	2	17	431	446	430	447	0.92
15	18	0.083	7.4	7.9	0.1	2	23	458	480	458	480	0.95
16	18	1.3e-06	0.00012	23.1	0.4	3	23	488	508	487	508	0.98
17	18	0.0001	0.0091	17.1	3.1	1	23	514	536	514	536	0.98
18	18	0.11	10	7.5	2.7	1	21	542	562	542	565	0.92

Sequence Information

Coding Sequence: ATGTGCAAGATGTGCGAACGAACATTCGCGTCACAGCCACTAGTATCACAACACTACCGCTTTGTCCACCTAAAACGTCGACCGAAGGATAGAAAATGTCGTTACTGCGACAAAAAAGTCCCGAGTTACCTTAAAGCGTACCATTTGGAAGACGAACACGGCATTCCGGCGCCATCTTGTGGCGTTTGCCAAAAGAGGTTTAGATACCCGTGCCTGGTGCTTCAGCATCACAAAAAAGTTCACATGCGCGAGCGGACTGTGTCCTGCAATGTATGCGATAAAGTGTTTTTCGATAATTTGACTCTCAAATCGCATCTGTTGACGCATTCCAACGAAAAGAAGTATAAGTGTGAAATGTGCGAACAGGAGTTTAGGTGGAAGAATAATTTGAAAGACCACATTATTGGGCATATGGGGGACGCTTCAGAGTGGCCCTATGTGACCGTCGAAGACGATGACGTCACTCATTACCAGTGCACCATATGCAAAAAAAAATACGCCAGTCGTGATCTGTTCTCACAGCACTACAGATACGTACACTTGAAACAGCGGCCGAAACTACGCGCCTGCTATCTGTGTCCGATGCGAGTGCCGACTTTTAAGCGATCGCTACATTTGGAAGAGGTACACGGCGTGGCGAGGCCGACGTGTAACGCGTGCGGCAAAAAGTTCTCGTATCCTAATCAGGTGATACGACATCAGAAAGCTTATCACATGGATGAAAAGATGTTTCAATGCACGCATTGTGATATGAAATATGCGACTAAGTGGCAGTTAACACGCCACGCCGATAAACATTCTACAAAAAGACCATACAGATGCGAATATTGCGATAAAACTTTTAAATGGAAAAAGAATTTGAAGACACACGTCATGATCCATCGAGATGAGAGGCCACATGTCTGCGATGTTTGTCAAGAAGCGTTCGTGCAGCAGTCTAGTCTAAAGTATCATTTAATGAAAAAGCATACGCGGTTAAGTGATGAAGTCGGCGTATACGTAACAGTGACAAGGGATAAAAACAAAAAATACACATGTAAGGCTTGCGAAGTCGCCTACAGACGTATCAGCGACCTTCGCTACCACGTAATACGTGTCCATCTGAAGCGAAAGTTTATCAAATGCAAATACTGCACGGAGACATTCATGTACCACAGCCAGAGAAAAAAACACGTGTTAAACGAACATTTGAAAAACGGACCAGATAAATACGTGTGCGACTATTGCAATAGAGAATTCAAAAGAAAAAACACTTTAGCTGAACACATGATGGATGTGCACATAGAAAAGAAGTGTTCGCATTGTGATCTGAAGTTTATTAGAAAGCGTTATTTATTTCATTTGAACGAAGCACATGGCGTTGATATGCCGACGTGCGGGATATGCGGTTTGAGGACGTTGATGGAGAGCGCTCTCGTTAGGCATCAGAGGAAAGTTCATTTGAAAGAGAAAACCAAAATTTGTACGGTTTGCAAAAAGGGCTTTTATACGGAGTCCAATCTGCGAGCTCACATGATAACTCATGAGCAAATTAGAGTGTTCAAATGTGATGTTTGTGCGAAGAGTTTTGCTCGTAGAGAATGCTATAAAGCTCATTATCGATTACATACAGGAGAACGCCCATATGTGTGTGGGGTATGCAGCTTGACCTTTGTACAGCGTGCTAGCCTGAGATTTCATATAAAATGCCATCATTCGGATATCAAAAAATCTAAAAAGTAG
Protein Sequence: MCKMCERTFASQPLVSQHYRFVHLKRRPKDRKCRYCDKKVPSYLKAYHLEDEHGIPAPSCGVCQKRFRYPCLVLQHHKKVHMRERTVSCNVCDKVFFDNLTLKSHLLTHSNEKKYKCEMCEQEFRWKNNLKDHIIGHMGDASEWPYVTVEDDDVTHYQCTICKKKYASRDLFSQHYRYVHLKQRPKLRACYLCPMRVPTFKRSLHLEEVHGVARPTCNACGKKFSYPNQVIRHQKAYHMDEKMFQCTHCDMKYATKWQLTRHADKHSTKRPYRCEYCDKTFKWKKNLKTHVMIHRDERPHVCDVCQEAFVQQSSLKYHLMKKHTRLSDEVGVYVTVTRDKNKKYTCKACEVAYRRISDLRYHVIRVHLKRKFIKCKYCTETFMYHSQRKKHVLNEHLKNGPDKYVCDYCNREFKRKNTLAEHMMDVHIEKKCSHCDLKFIRKRYLFHLNEAHGVDMPTCGICGLRTLMESALVRHQRKVHLKEKTKICTVCKKGFYTESNLRAHMITHEQIRVFKCDVCAKSFARRECYKAHYRLHTGERPYVCGVCSLTFVQRASLRFHIKCHHSDIKKSKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -