Dsac009879.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010003202.1:16073-25996[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0021 0.19 13.0 0.2 1 23 148 171 148 171 0.91 2 28 0.17 15 7.0 0.2 1 23 197 220 197 220 0.97 3 28 0.019 1.7 10.0 0.2 2 23 243 264 242 264 0.97 4 28 0.00021 0.019 16.1 0.3 1 23 268 290 268 290 0.98 5 28 0.28 25 6.3 2.2 1 23 295 318 295 318 0.93 6 28 0.69 61 5.1 0.9 2 23 328 350 328 350 0.88 7 28 0.00037 0.033 15.3 2.0 2 23 358 380 357 380 0.95 8 28 8.2e-06 0.00073 20.6 3.1 1 23 386 408 386 408 0.97 9 28 1.3e-05 0.0012 19.9 1.0 1 23 414 436 414 436 0.98 10 28 0.01 0.89 10.8 0.8 1 23 505 527 505 528 0.95 11 28 0.001 0.093 13.9 0.1 2 23 557 579 556 579 0.97 12 28 0.042 3.7 8.9 0.7 2 23 602 623 601 623 0.96 13 28 0.011 1 10.7 0.3 1 23 627 649 627 649 0.96 14 28 0.016 1.4 10.2 1.1 1 23 654 677 654 677 0.97 15 28 3.9 3.5e+02 2.7 2.6 2 23 684 706 684 706 0.93 16 28 0.0055 0.49 11.7 4.4 2 23 714 736 713 736 0.96 17 28 0.0012 0.1 13.8 5.9 1 23 742 764 742 764 0.97 18 28 8.6e-06 0.00077 20.5 1.2 1 23 770 792 770 792 0.98 19 28 0.0099 0.88 10.9 4.9 1 23 798 821 798 821 0.96 20 28 0.067 5.9 8.3 3.1 1 23 912 934 912 935 0.96 21 28 0.0051 0.45 11.8 0.1 2 23 964 986 963 986 0.95 22 28 0.96 85 4.6 0.4 2 23 1009 1030 1008 1030 0.95 23 28 0.026 2.3 9.5 0.2 1 23 1034 1056 1034 1056 0.94 24 28 0.092 8.2 7.8 2.0 1 23 1061 1084 1061 1084 0.93 25 28 0.0046 0.41 11.9 2.2 2 23 1091 1113 1090 1113 0.91 26 28 2e-05 0.0017 19.4 1.7 2 23 1121 1143 1120 1143 0.97 27 28 0.00012 0.011 16.9 2.1 1 23 1149 1171 1149 1171 0.97 28 28 0.018 1.6 10.1 2.8 1 23 1200 1223 1200 1223 0.96
Sequence Information
- Coding Sequence
- ATGATCAGAGGTAAGTGCCGGGATACTTCTGATATTTCTGTAAGTAGTATACTGAGAGATCTGCTTTTAGGAAATTCGTCGAATCCTGAAAAAAGTTCAGCTTGCGATTGGATTGTTACCAAGAGCGGTCAAAGCATTCGACGCTTAGAGCAAACAATAACTGCTCCGAAAGAGTACCGACACACTAATATTTCTGAAAGTAGTAAACTGAAAGATCTACTAATAGGGGACTCGTCGAAACCCAAAAAAAGTCTAGCTGCCGGTGTTGTTACCATGAAAAGCGGTAACGACATTAGACGCTTAGAGCAAACAATAAGTACTCCTAAAAGTAAAAGGGAATATGGAAAAATAGCAAACCTGTTACACAAACATAAGCATAACATGAGACAAATACTCCTTTGTACTAACGCAAATCCGATCCGAAACTACAACGGAAAGAGCTATTTCTGTGGCTATTGTAATGAAGAATTTCCTACACCCCCTGAACTCAAACAACACTCGCTGTATGAACATGGAGATGCAGATAAGAATATTTATATGCGCATATGCTATTGGCAGAAACTCGCAGTTAAATTCGACATCACAGACTTTAAATGTACATTATGCGAAGAGGGTTTGAACAATCTAGAAGATGCCGTAAAACATTTGAAGAGTCGACACGAAAAATTATGGTACGACGACATCACCAATCACATACTTCCGTTCAAGTTCAGCAAAGAAGGCGTAACATGTCCCATATGTTTCCAATTCTTTGTCAGTTTCACACCGGCTCAAGTCCATATGAGGATGCATTACAAAAATTTCATGTGCAATATTTGTGGCATGCCCTTCCTCAATCCGGCTTCTTTGCGTAATCACAGGAAAAGGCACAAGCAAGGTGAATTCGCCTGCAGCTTTTGTGAAAAGATCTTTGAGACTCCGGATAAAAAGTATCACCACGAGAAAAATCTTCACATGGGTGATACGGAGGCAAGGAAAAGAAAATGTACAGAGTGTTTTGAGACATTTGCTTCTCACGTGAAGAGATTAGATCATATGGTCGAAGTTCACGGTAAAAATCCTGTTCAGGTCAAGTGTCTGGCTTGTGATCGCACGTTTCGTAATACAAGTAAATTGAGACAGCACACGAGAAGAGATCATATGATGGAGAGGTCTCATGAATGTCAGATATGCGAAAAGACATTTTTCACGTCGACCCTTTTGAAGAGGCATATGCTGATGCACACCGCCACTAAACAGTTCATGTGCGACGTCTGTTCTAAGTCGTTTGGTAGAAAGGATACTTTAAGTCAGCATTTGCGACTACACGGTGACGATAGCAGGTTCAAATGGTCGGCCGTCACACGTAGCCAAAATGTATCGCATAACCTTCAGAAATCACGTTCCACAAAGAGAAATTCCGATGTAGACACCGAGACGGAATTACGAGAAATATATAAGCATCAAGCCAATCTTAACATTCTAAGGCAATGCTCGAACGCTACTCCTATCAGGAGCCGCGGTGGCATCGGCTACAAATGCTCTTACTGTACAGACGAATATCCAAATCCAGCAGATCTAAAAAGTCACACCTTAGAACATCATAGTGACGAATCCGCCCGCAAAATTATGGCAAAGGAAATGAATGTACTATATTCTTACGTCATCAAACTTGATATTACTGCGTTGAAATGTACCATATGCGATACCGGCTTTGACAGCTTAGACGATTTCGTATATCACTTGATGACTGACCACGATAAAAAGATATACACGGATATAGACGACCGCATTATACCGGTAAAATTCGAAGACAAGATACTGAGTTGCGTTTTCTGTTTGCAAGCGTTCAACAAATTCAAGACACTGATACAGCATATGAACGTTCATTACAGAAATTTCGTTTGCGACGTTTGCAATGCCGGCTTCGTGTCTCGCAATTTATTATATAACCATTCTTTCACGCATCGAGTAGGAGAATTCAAATGCAGTTTATGCGAAAAAAAATTTGATACCATTGTGAAGCAGAAGGCGCATGAGAAAACAGTTCATCAACAAGCACGTAGGAACACATGTGGTTTTTGTAACATGAAATTCAGGGACTTCAAAAAGAAAGAACTGCATTTAACTAAGATGCATGGTGTGGCAATAATGCGAATGGAGTGCCATGCTTGTCACAAGACCTTCCCGGATAGAAAACGATATACCGTCCATATGAAAAGAGATCATTTGATAGAAAGAGAGCATCACTGCCAAGAATGTGAGATGTCGTTCTTTAGATTCAGTGAGTTGAAGAAACATATGATAAAACATACTGGGGAAAAGAATTATGAGTGCTCTGTATGCAAGAAGTCTTACGGAAGAAAAAACACGCTGACGGAGCATATGAAAATACATAACAACATAAGAAACTATAAGTGTTCATACTGTAATATGAAATTCATACAGAAATGCACATGGAAAATGCATTTAAAAGCCAAGCACCTCATTACAAATGCAGAATACAGTAAAGATTCTCCAGATGCGGATGAACATACTATAGTCATTATAGAAAATACGCCCAATAGTATTTGTTCGGCTGACACACGTAGCCAAAATGTACCGCACAACCTACAGAAACCACGCTCCACAACAAGAAAGTCCGATGTAGACACGGAGGTGGAAATACGAGAAATATACAAACATCGGGCTAATTTAGACACCATAATGCAATGCTCGAACGCTACACCTATCAGAAGCCACGGACCTATCGGCTACACCTGCTGTTACTGTAAAGATGAATATCCAAATCCAGCAGATCTAAAAAGTCACACTATCAAACATCATAGTGTCAAATCCGGACATAAAATGATAGCAAAGGATGTGAAAGTAATCTATTCTTACGTTATCAGACTTGATATTACTGCGTTGAAATGTACCATATGCGATACCGGCTTTGACAGCTTAGACGATTTCGTATATCACTTGGTCACTGACCATGATAAAAAGATATACACGGATATAGACGACCGCATCATACCGTTCAAATTCGAAGACAAAATATTGAGTTGCGTTTTCTGTTTGGAAGAATTCAACAAATTCAAGCCTCTGATGGGTCATATGAATACCCATTACAGAAATTTCGTTTGCGACGTCTGCAATGGCGGCTTTGTGACTCGTCACTTGTTGTATAACCACGCTGTCATCCACAACACAGGAGAATTCGAGTGCAATTTTTGCGACAAAATCTTTGTTACATTTAGAAGGCAGAAATCGCATGAGAATAAAATTCATAAACAAACAAATATGTGTAAATGTGGTTATTGTAACGAGAAATTCAGTAACAGTGATAAAAAGGAACGGCATTTAGCTGAGGTACACGGCGTGACAACAGCCGAGATGAAGTGCCCGACTTGTTCCAAGGCCTTTTCAGATAGAAAACTCTATAATAGGCATATAAAGAGGTATCATTTAATGGAGAGAAAGCATAAATGTGACGAATGTGAAATGGAATTCTTTAGGTTATCTGAGTTGACAAAACATATGGTAAAACATACTAGAGAGAAGAAATATCAACAACACAAGGAGTCGCACGGCAAAAATACGGAGAATATGAAATTACATGCCAGGTTAAGAAAATACAAATGTCAATACTGTAATCAGAATTTCATACAGAAACACATCTTGAAAGGGCATCTAAAGCTCGAGCATGGCTTGTCGGTGTAA
- Protein Sequence
- MIRGKCRDTSDISVSSILRDLLLGNSSNPEKSSACDWIVTKSGQSIRRLEQTITAPKEYRHTNISESSKLKDLLIGDSSKPKKSLAAGVVTMKSGNDIRRLEQTISTPKSKREYGKIANLLHKHKHNMRQILLCTNANPIRNYNGKSYFCGYCNEEFPTPPELKQHSLYEHGDADKNIYMRICYWQKLAVKFDITDFKCTLCEEGLNNLEDAVKHLKSRHEKLWYDDITNHILPFKFSKEGVTCPICFQFFVSFTPAQVHMRMHYKNFMCNICGMPFLNPASLRNHRKRHKQGEFACSFCEKIFETPDKKYHHEKNLHMGDTEARKRKCTECFETFASHVKRLDHMVEVHGKNPVQVKCLACDRTFRNTSKLRQHTRRDHMMERSHECQICEKTFFTSTLLKRHMLMHTATKQFMCDVCSKSFGRKDTLSQHLRLHGDDSRFKWSAVTRSQNVSHNLQKSRSTKRNSDVDTETELREIYKHQANLNILRQCSNATPIRSRGGIGYKCSYCTDEYPNPADLKSHTLEHHSDESARKIMAKEMNVLYSYVIKLDITALKCTICDTGFDSLDDFVYHLMTDHDKKIYTDIDDRIIPVKFEDKILSCVFCLQAFNKFKTLIQHMNVHYRNFVCDVCNAGFVSRNLLYNHSFTHRVGEFKCSLCEKKFDTIVKQKAHEKTVHQQARRNTCGFCNMKFRDFKKKELHLTKMHGVAIMRMECHACHKTFPDRKRYTVHMKRDHLIEREHHCQECEMSFFRFSELKKHMIKHTGEKNYECSVCKKSYGRKNTLTEHMKIHNNIRNYKCSYCNMKFIQKCTWKMHLKAKHLITNAEYSKDSPDADEHTIVIIENTPNSICSADTRSQNVPHNLQKPRSTTRKSDVDTEVEIREIYKHRANLDTIMQCSNATPIRSHGPIGYTCCYCKDEYPNPADLKSHTIKHHSVKSGHKMIAKDVKVIYSYVIRLDITALKCTICDTGFDSLDDFVYHLVTDHDKKIYTDIDDRIIPFKFEDKILSCVFCLEEFNKFKPLMGHMNTHYRNFVCDVCNGGFVTRHLLYNHAVIHNTGEFECNFCDKIFVTFRRQKSHENKIHKQTNMCKCGYCNEKFSNSDKKERHLAEVHGVTTAEMKCPTCSKAFSDRKLYNRHIKRYHLMERKHKCDECEMEFFRLSELTKHMVKHTREKKYQQHKESHGKNTENMKLHARLRKYKCQYCNQNFIQKHILKGHLKLEHGLSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -