Basic Information

Insect: Diatraea saccharalis
Gene Symbol: -
Assembly: GCA_014843785.1
Location: JACGTY010016621.1:2735-7464[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.9e-07 6.1e-05 23.9 0.6 1 23 183 205 183 205 0.98

2 14 5.4e-05 0.0048 18.0 0.6 1 23 211 234 211 234 0.94

3 14 4.5e-05 0.004 18.2 1.3 1 23 240 262 240 262 0.98

4 14 4.8e-06 0.00043 21.3 3.8 1 23 268 290 268 290 0.99

5 14 2.6e-06 0.00024 22.1 3.0 1 23 296 318 296 318 0.99

6 14 3.4e-07 3e-05 24.9 0.5 1 23 324 347 324 347 0.95

7 14 1.6e-05 0.0014 19.7 1.9 1 23 353 375 353 375 0.98

8 14 2.2e-05 0.0019 19.2 0.9 1 23 381 403 381 403 0.98

9 14 0.00053 0.048 14.8 1.9 1 23 409 431 409 431 0.99

10 14 1.4e-07 1.3e-05 26.1 0.7 1 23 437 459 437 459 0.98

11 14 3.3e-07 2.9e-05 24.9 2.3 1 23 465 487 465 487 0.99

12 14 0.08 7.1 8.0 3.1 1 23 493 512 493 512 0.95

13 14 1e-06 9.3e-05 23.4 1.4 1 23 518 540 518 540 0.97

14 14 0.00062 0.055 14.6 1.5 1 21 546 566 546 567 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.9e-07	6.1e-05	23.9	0.6	1	23	183	205	183	205	0.98
2	14	5.4e-05	0.0048	18.0	0.6	1	23	211	234	211	234	0.94
3	14	4.5e-05	0.004	18.2	1.3	1	23	240	262	240	262	0.98
4	14	4.8e-06	0.00043	21.3	3.8	1	23	268	290	268	290	0.99
5	14	2.6e-06	0.00024	22.1	3.0	1	23	296	318	296	318	0.99
6	14	3.4e-07	3e-05	24.9	0.5	1	23	324	347	324	347	0.95
7	14	1.6e-05	0.0014	19.7	1.9	1	23	353	375	353	375	0.98
8	14	2.2e-05	0.0019	19.2	0.9	1	23	381	403	381	403	0.98
9	14	0.00053	0.048	14.8	1.9	1	23	409	431	409	431	0.99
10	14	1.4e-07	1.3e-05	26.1	0.7	1	23	437	459	437	459	0.98
11	14	3.3e-07	2.9e-05	24.9	2.3	1	23	465	487	465	487	0.99
12	14	0.08	7.1	8.0	3.1	1	23	493	512	493	512	0.95
13	14	1e-06	9.3e-05	23.4	1.4	1	23	518	540	518	540	0.97
14	14	0.00062	0.055	14.6	1.5	1	21	546	566	546	567	0.94

Sequence Information

Coding Sequence: ATGACTACTAATTCATCAATCCCTGGTTTATGTCGTTGCTGCCATGCTGAAGGGGATTTCAAAAGTCTTGACATTTCCTATAATTTTAATGGGATCGATGAAGTGTATTCTGTTATGCTTCTCGATACTTTCAATGTGAATATTACTTCAGCGGAAGGTTTGTCCTTTTACCATATTTGCGAAGTGTGTGAACTACGACTCAGGGATGCTTCATTTTTTAAGCAACAAGTGGTGGCATGTGAACAAAAGTTTATAAAACATTGTAAGGAAAATGGTTTGAGAGATTTTAAATCACTTACCAAAGTGAAGCTGGAGAAAGAAAGTAGTTGTTTTGATGAGAAAGGAGAGAAAGATGATGAGGATGAGAAAGTATCTTCAATGGAAATAGTTTTTCAACCAACTTTGGACTTGGAAGATGAGCCCCTCTCCTCTCTCCGTTCTAGAAAAAATGAGACAAAAGATTATGAAAATGATGATTGGGATGCGGCAGAGGATATTTATAACGACGAGGATTCTAAACTCCACAATAAATCTAAACTCAAGAAGTACTCATGTGAAGTATGTCAAAAGAAGTTTACATACAACGGTTCTTTAGAAGTTCACATGAAAATCCACAGAGGGGAGAAAACATACCAATGTCAAATCTGTAACAATAAATTTATACAAAATAAAGCGTTAACGAAACACATAGAAGATAGTCACGGGGACGGTGATAAATATCCTTGCACGTTGTGCACGAAAACTTTTGAAAAGGCGAGGTTTCTAAAGACACATATAAAGATACATTTCGAAGAGCAAAAGTTCAAATGTCCTCACTGTGAGAAAGAGTTTCAAAGAAAGAAAGGATTGAAAGAACACTTAAAAACGCACACAGGTGAACGAAAGTTTACCTGTGACGTGTGCAATAAGTCGTTTGGACACAATCAGACATTGAAGTCCCATATGTTAACGCACACAGGCGAACGTCCCTACGTCTGCGACATATGCGGCAGGAGATTTCCACAACGGACACATTTGAAACGGCACATAGTTATAATCCACAGTGGCGTCAAACCTTATTCTTGTCAAGTGTGTCAGAAACAGTTCTCTAGTAAAAGTTATTTGTCGATCCACGAACGTCAGCACACGGGCGAACGTCCGTTCTCATGCGATGTGTGCAAGAAAGATTTTACCGCGTACACGACATTGAAAGTTCACATGCGCGTTCATACCGGCTTAAAACCTTATTCATGCAGTTTTTGCAATAGGCAATTCGCTCAGATGGCTAGTTTTAAGCTTCACGAACGCACGCACACGGGAGAGCGTCCGTTCTCATGTAAGGTTTGTAAGAAACCTTTTTCTGATAACGGCTACTTGAAAATACATATGAGGATTCATAGTGGCGTGAAGCCGTACGTTTGCGATATATGCAATCGTTGTTTCAGAGAAACTGGTCAATTGAAGCGGCACATGAGAGTCCATACTGGTATCAAACCTTATACTTGCAAGATTTGCAATAAACAAATTGGCAATCTTTCGAAACATATGAGAATACACTCAGATGAGAGGCCTTTTGCTTGCCACATATGCAATAAACAGTTTTCTATTAATGGTAACTTGAAGCTGCATATGCGTGTTCACAGTGGCGAGAGACCGTATGCATGCGATGTTTGCAATAGTCAGTTTACACAAAGTAGTGGTTTAAAAAGGCATAGATGCTCTCGTACAGGTAAAATCGATAGTTGA
Protein Sequence: MTTNSSIPGLCRCCHAEGDFKSLDISYNFNGIDEVYSVMLLDTFNVNITSAEGLSFYHICEVCELRLRDASFFKQQVVACEQKFIKHCKENGLRDFKSLTKVKLEKESSCFDEKGEKDDEDEKVSSMEIVFQPTLDLEDEPLSSLRSRKNETKDYENDDWDAAEDIYNDEDSKLHNKSKLKKYSCEVCQKKFTYNGSLEVHMKIHRGEKTYQCQICNNKFIQNKALTKHIEDSHGDGDKYPCTLCTKTFEKARFLKTHIKIHFEEQKFKCPHCEKEFQRKKGLKEHLKTHTGERKFTCDVCNKSFGHNQTLKSHMLTHTGERPYVCDICGRRFPQRTHLKRHIVIIHSGVKPYSCQVCQKQFSSKSYLSIHERQHTGERPFSCDVCKKDFTAYTTLKVHMRVHTGLKPYSCSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKPFSDNGYLKIHMRIHSGVKPYVCDICNRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRIHSDERPFACHICNKQFSINGNLKLHMRVHSGERPYACDVCNSQFTQSSGLKRHRCSRTGKIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -