Dsac023994.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010000229.1:33187-40717[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.038 3.4 9.0 0.8 1 21 80 100 80 101 0.95 2 29 0.11 10 7.5 1.0 2 23 129 150 129 150 0.95 3 29 5.8 5.2e+02 2.1 0.4 2 23 173 194 172 194 0.92 4 29 0.018 1.6 10.0 0.1 1 23 198 220 198 220 0.95 5 29 0.077 6.9 8.0 0.2 1 15 225 239 225 248 0.77 6 29 0.12 11 7.4 0.1 3 23 256 277 254 277 0.94 7 29 0.0075 0.67 11.2 1.2 1 23 284 307 284 307 0.97 8 29 9.3e-05 0.0083 17.2 4.2 1 23 314 336 314 336 0.97 9 29 5.7e-07 5.1e-05 24.2 2.6 1 23 342 364 342 364 0.98 10 29 0.00015 0.014 16.6 0.4 1 23 367 390 367 390 0.96 11 29 0.037 3.3 9.1 0.1 1 23 437 459 437 459 0.95 12 29 0.012 1.1 10.6 3.7 1 23 527 549 527 549 0.98 13 29 0.00055 0.049 14.8 0.1 3 23 555 575 554 575 0.96 14 29 0.002 0.18 13.0 0.4 2 23 584 606 583 606 0.94 15 29 0.047 4.2 8.7 0.7 1 23 612 635 612 635 0.96 16 29 0.041 3.6 8.9 1.6 1 23 641 664 641 664 0.96 17 29 0.082 7.3 8.0 0.2 1 23 670 692 670 692 0.95 18 29 9.2e-05 0.0082 17.2 5.2 1 23 698 720 698 720 0.98 19 29 0.00089 0.079 14.1 6.2 1 23 726 748 726 749 0.95 20 29 1.6e-05 0.0014 19.6 0.4 1 23 803 825 803 825 0.97 21 29 3 2.7e+02 3.0 0.1 2 23 849 871 848 871 0.93 22 29 0.21 19 6.7 2.6 1 23 893 915 893 915 0.95 23 29 0.0019 0.17 13.1 0.9 3 23 921 941 920 941 0.97 24 29 4.9e-05 0.0044 18.1 0.4 3 23 951 972 949 972 0.94 25 29 0.082 7.3 8.0 1.6 1 23 978 1001 978 1001 0.95 26 29 0.29 26 6.2 0.5 1 23 1007 1030 1007 1030 0.94 27 29 0.0001 0.0089 17.1 0.4 1 23 1036 1058 1036 1058 0.97 28 29 0.0001 0.0091 17.1 3.6 1 23 1064 1086 1064 1086 0.98 29 29 7.3e-05 0.0065 17.6 6.1 1 23 1092 1114 1092 1115 0.96
Sequence Information
- Coding Sequence
- ATGAGAAAATCTGACTGGATCTTTTTATTTTTAGGACGACGCGGACAAAATAACGTACCCAATGATAATAAAGTAGCGGAAACTGAAAGTTTACAAAACGAACTAGACGCTAACACAACTAAGAAACGGCGCTACCAGAGAAGCGCAAGGGCAGAAGCTATATTTATTACTAAGAAGAATGCTAGTGTCATATTGGAATGCTGGTCCTTTTGCCCCTTCAGGTGGAAACGTAACAAATTTCAGTGTTCTTATTGCGAAAGCATCTTCACTGAATGTCAGTTGTTAAGAGAACACGTCAGAGTGTGTGCGAGCAGCCATTGTGTCAAAGATATCTATAAAAAATTCAAGGAGATGAATTTCATTAACGTTGATATAACCGATGCTCGCTGCAAATTGTGTTCGGTCTCTTTCGTCGATGTTACCCATATGAGAGATCATGTTATACAGCATGGTTTCAATTTCAATACCAATCATCCAGACGGTGTATTGCCATTCGTTCTGAACAAAGAATCTTGGAAGTGCATTATATGTTATGAGAAGTTTAACAACTTCCTAAAAGTTTATGAACACATGAATGTACATTACCAACATTACATTTGTGCTACGTGTGGTAAAGGTTACATGACTGCTCCGAGATTAAGAAAGCATTCGGAAGTTCACATATCGGGATCATTCCCTTGTAATGAGTGTGGACGTATATTTACTATGCGTGCTGCCAGAGATTATCATAAAGCGAATGCACATGCTAAGGGACCTCGTTACGGATGCCCAAATTGCAATCTACGATTTGAAAACTATAACGAAAGAATGGCGCATCTAAATGAAGCTCATCGGGAAAAAGAGGTCTTATATAGCTGCGCGCATTGCGAATTGAGCTTTAAGACGAGTGGAAAACGTGCTATGCACGTGCGTTCAGTCCATTTTCCACCGCAGAGGGACTTCTGTTGTCCACATTGCGAATGGCAATTTAAAACTGGTTACGAATTAAAGAGACACATGATAAGGCATACAGGAGAAAGGAATTTTCATTGTAATATCTGTGGGAAAACATTTCCTAGAAATAGAGCGTTAACAACTCATCTTAAGACACATGAAGAATTTAGCTGCAAATGGTGTACAGCCGTATTTAAGCAACGAGCTCAATTGTTATCTCATTTGCGTGCAAATCATCCTCATTTGGATGACACTATTGGATCCGACTACAATCTTAAATGGAAACCCAGGCGCAAGTATAACGATCACAGAGACAATGCTGCAATAATTATAGAGTGTTCCAACGCTTGTCCGTTTAGGTGGAAGCGTGGTTCTTTCATCTGCGGCTACTGTCAACTATCGTTCGGCGATCTGTCAGCTGTGAGAGATCACTCTATAGTACATCCGATCAGAATTGAAGCTATGCGTTTCTCAAAGCCTGTAGATAACATTAAAATAGATATCACTGGACTCAGATGTGAACTGTGTTTAGAGAATATGGTAGACCTCAACACCCTCAAAGACCATCTACTTGAAGTCCATAATAAACCTATAGAAATTAATGTCGATTTAGGAGTAACGCCATTCCTTACTGAGGACAACGATTTTATATGTACTCACTGTAATGAAAAATTTGAACTTTTCTCCAAAGTGAATACGCACATGAATAAACATTACCCGAATAATATATGTTACGAATGCGGAAAGTCTTTTTCTGCACCCGGAAGATTAAAATCACATTTGGCAATACACGAGTCTTTTACAAAAGGACAACAGAAGTGTACAAAATGTGACAAGGTTTTCGCTACGAGGGTCCAAAAGAATGGGCATATTGCATCAGTCCATGGACCTGAGTTTAGATACCGGTGTCCTTACTGCAAAGATATTTTCAAAAAATATGCCGATAGAGCGAAACATCTTAAAGAGGCTCACGACAAGAAAGTGGAGTATCCGTGCCATTTATGTCCTGCCGTTTTCGCTATGTGCAATCAGAGAACTAAACACATACAACAAGTTCATATTAAGCTTAAAAATTTCTTTTGTCTGTTATGTCCTTCACAGTTTGGTACTGCGGCTCAATTAAGGAATCACGTGGTGAAACATACCGGAGAGAGAAATTTCCACTGCGAAGTTTGCAAGAAATCTTACCCACGGCATAAAACTCTTAAAGAACACATGCGTATCCATAATAATGATAAGAGATTTATTTGCGAATATTGTAATCATGCGTTTGTGCAGAAGTGCAGTTTGAAAAGTCACCTGAGAGCGCATCATCCTAATGCTGAACCACTTAAAAGAGGAGGATTGGACAACATTCCTAAATGGAAACCCAAGTGGAAGCCCAAGTGGAAGTGTAACAATGATCAAAGAGTGAATGCTGCGATTATTTTAGAATGTTCAAATGCTTGTCCATTTAAATGGAAGCGTGGCATTTTCACGTGCAGTTACTGCGATCTCACGTTTGTAGATCTGTCGTCCCTCAGAGATCACACCATAGTACACCCAAACAAAATTGAAGCTCTGCGTTTCACAAACGTTACAAATACCATTAAAGTAGATATCACTGGACTCAGATGTGAGTTATGCTTACAGAATATGGCAGACCTCGACACCCTGAAGGACCATCTATTGAAAGTCCATGACAAACCTATCGCACCAGATTTAGCCTTAGGAGTAATACCGTTTATTGTTGAAGGCGATGAATTCATATGTCCTCATTGTAACGAAAGATTTCAAATGTTCTTCAAAGCTACTTCGCATGTGAATACACATTATCCGAATAACATCTGTTTCGAATGTGGTAAAGCATTCTGTTCAATAAATAGGCTGAGTGCACATTTATTAACACATGAGTCTCTTACGAAAGTGCAGCAGAATTGTAAAAAATGTGATAAGGTTTTTGCTACAAAGGTCAAATTGAATGCTCACGTAGCTAAGGAGCATCGATCTGAGAATAAACACAAGTGTCCTGTCTGCAAAGACACTTTCAAAAATTATCCTGACAGACTTAAGCATTTGAAAGAAGCCCACAACAAGAAAGTGGAGTTTCCATGCCATTTATGTCCTGCTGTTTTCGCTATGTACAATCGGAGAACTAAACACATAGCGAAAGTTCATTTAATGATTAGAAAATTCTCTTGCTCAGTTTGTGATATGAGGTTTGGTACTGCAGACCAAGTGAAAAGGCACATGGTGAAGCATACGGGAGAGAAAAAGTTCCACTGTGAAGTGTGCAAGAAGTCTTACGGTCGACACTCGACTCTTGTCGAACACATGCGTATCCATAATAATGACAGGCGATTTGTTTGTGATTATTGTAAACGTGCGTTTGTACAGAAATGCAGTTTAAAGAGTCACTTGAAAACTCATCATTCCAACGCGAATCCACACAAAAAGGAGAGTGACTAA
- Protein Sequence
- MRKSDWIFLFLGRRGQNNVPNDNKVAETESLQNELDANTTKKRRYQRSARAEAIFITKKNASVILECWSFCPFRWKRNKFQCSYCESIFTECQLLREHVRVCASSHCVKDIYKKFKEMNFINVDITDARCKLCSVSFVDVTHMRDHVIQHGFNFNTNHPDGVLPFVLNKESWKCIICYEKFNNFLKVYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCNECGRIFTMRAARDYHKANAHAKGPRYGCPNCNLRFENYNERMAHLNEAHREKEVLYSCAHCELSFKTSGKRAMHVRSVHFPPQRDFCCPHCEWQFKTGYELKRHMIRHTGERNFHCNICGKTFPRNRALTTHLKTHEEFSCKWCTAVFKQRAQLLSHLRANHPHLDDTIGSDYNLKWKPRRKYNDHRDNAAIIIECSNACPFRWKRGSFICGYCQLSFGDLSAVRDHSIVHPIRIEAMRFSKPVDNIKIDITGLRCELCLENMVDLNTLKDHLLEVHNKPIEINVDLGVTPFLTEDNDFICTHCNEKFELFSKVNTHMNKHYPNNICYECGKSFSAPGRLKSHLAIHESFTKGQQKCTKCDKVFATRVQKNGHIASVHGPEFRYRCPYCKDIFKKYADRAKHLKEAHDKKVEYPCHLCPAVFAMCNQRTKHIQQVHIKLKNFFCLLCPSQFGTAAQLRNHVVKHTGERNFHCEVCKKSYPRHKTLKEHMRIHNNDKRFICEYCNHAFVQKCSLKSHLRAHHPNAEPLKRGGLDNIPKWKPKWKPKWKCNNDQRVNAAIILECSNACPFKWKRGIFTCSYCDLTFVDLSSLRDHTIVHPNKIEALRFTNVTNTIKVDITGLRCELCLQNMADLDTLKDHLLKVHDKPIAPDLALGVIPFIVEGDEFICPHCNERFQMFFKATSHVNTHYPNNICFECGKAFCSINRLSAHLLTHESLTKVQQNCKKCDKVFATKVKLNAHVAKEHRSENKHKCPVCKDTFKNYPDRLKHLKEAHNKKVEFPCHLCPAVFAMYNRRTKHIAKVHLMIRKFSCSVCDMRFGTADQVKRHMVKHTGEKKFHCEVCKKSYGRHSTLVEHMRIHNNDRRFVCDYCKRAFVQKCSLKSHLKTHHSNANPHKKESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -