Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.51 6.9e+02 1.1 0.1 16 29 32 45 29 56 0.77

2 8 0.92 1.2e+03 0.3 0.1 16 24 79 87 71 104 0.70

3 8 0.029 39 5.1 0.0 12 26 120 134 115 138 0.83

4 8 0.44 5.9e+02 1.3 1.3 17 38 154 172 143 180 0.76

5 8 0.00011 0.14 12.9 3.5 12 44 176 204 161 204 0.83

6 8 0.0032 4.3 8.1 2.9 13 43 232 259 224 260 0.86

7 8 0.0001 0.14 12.9 1.6 3 40 251 285 249 289 0.81

8 8 0.02 27 5.6 3.2 4 43 281 316 278 317 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.51	6.9e+02	1.1	0.1	16	29	32	45	29	56	0.77
2	8	0.92	1.2e+03	0.3	0.1	16	24	79	87	71	104	0.70
3	8	0.029	39	5.1	0.0	12	26	120	134	115	138	0.83
4	8	0.44	5.9e+02	1.3	1.3	17	38	154	172	143	180	0.76
5	8	0.00011	0.14	12.9	3.5	12	44	176	204	161	204	0.83
6	8	0.0032	4.3	8.1	2.9	13	43	232	259	224	260	0.86
7	8	0.0001	0.14	12.9	1.6	3	40	251	285	249	289	0.81
8	8	0.02	27	5.6	3.2	4	43	281	316	278	317	0.76

Coding Sequence: ATGACCGACAGCGATAGACGCCGTGCATTGAGACGGAACGTCCTAGAAGTACTATTGAGGTCAAATATTATGCCGTTTAGGTGGCTCAGGAGTTCCTTCAGATGTTTCTACTGCTACGAAGTCTTCGAAGAGTCGCACGCTTTGAAAGAGCATCAGATGGTTCATACGAGCGAAGACGTAATGTTCAAATCTATCAAGAATTTTTGGGAGCGAATAGTTTACGTCGATGTGTCGAATATATCTTGTAAACTTTGCTCTGAAGATGTTCATGATATCTATAGTCTTGTTGACCATTTAATAGAAAGTCACAGTATGCCTTTCGATAAAAACCTCGGTTTAGGTATGAGTCCATTCAGATTGAAAGATTTATCTGTCCAGTGCGTTCATTGTGAACAAGAGTTTGGCTCTTTTGGTCAGCTGTTGATACATACTGACAAGAAGCATAATGGACTCTCGACGATCTTATGTGAGATTTGCGGTCAGCACTTTAACAATAATCAGAGATTAAGGGAGCATTCCAATAAAGAGCACGGCACCAAATCTATATGTCAATTGTGTGGGGAAACATTTAGCATATCCAGAATGAGAACTCACATGCAAAACGTTCACAATAAACAATACAAGTGTTTCGTATGTACGGATCTCTTCGAAACTCATTATAAAAGGTCGTATCATATGATGACGGTGCATAAAAGCAGAGAACAAATCAAATGCCAGTATTGCGCCAAGAGTTACGTGTTCCGCAGTGCAATGCTGAGACACGTGAGGGAAACGCATTTGCAGGAGAGGAATGTTGTGTGCAAAATATGTGGGTTCAGGGCGTTCACAGGAAGTAGAATGCTCAGGCACATGACGAAGCATAACAGCGAGAGACCCGTCAAATGTATTGTGTGCGATAAAGTTTTCAAAACTAAGAAAACTATGGATCAACATTTCAATAATATACATAAAAATAATTATAATGAGAGCGATATGTCGAGTGGGGGAAGGACGGAAATCTTATAA
Protein Sequence: MTDSDRRRALRRNVLEVLLRSNIMPFRWLRSSFRCFYCYEVFEESHALKEHQMVHTSEDVMFKSIKNFWERIVYVDVSNISCKLCSEDVHDIYSLVDHLIESHSMPFDKNLGLGMSPFRLKDLSVQCVHCEQEFGSFGQLLIHTDKKHNGLSTILCEICGQHFNNNQRLREHSNKEHGTKSICQLCGETFSISRMRTHMQNVHNKQYKCFVCTDLFETHYKRSYHMMTVHKSREQIKCQYCAKSYVFRSAMLRHVRETHLQERNVVCKICGFRAFTGSRMLRHMTKHNSERPVKCIVCDKVFKTKKTMDQHFNNIHKNNYNESDMSSGGRTEIL

Sequence clustering based on sequence similarity using MMseqs2