Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438913.1:13005522-13017936[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.1 5.8e+02 2.9 0.6 1 23 158 181 158 181 0.87

2 15 0.54 75 5.7 0.5 4 21 261 278 260 279 0.93

3 15 0.74 1e+02 5.2 0.5 2 23 290 312 289 312 0.92

4 15 0.84 1.2e+02 5.1 5.7 2 17 350 365 349 370 0.86

5 15 0.49 69 5.8 1.5 1 23 375 397 375 397 0.97

6 15 1.3 1.9e+02 4.4 1.0 1 20 674 692 674 694 0.82

7 15 1.3 1.9e+02 4.4 2.5 1 23 706 728 706 728 0.95

8 15 0.041 5.8 9.2 0.3 2 23 734 755 733 755 0.96

9 15 0.91 1.3e+02 5.0 7.5 2 23 840 861 839 861 0.95

10 15 0.0095 1.3 11.2 0.5 2 23 877 898 876 898 0.96

11 15 6e-07 8.5e-05 24.4 2.7 1 23 904 926 904 926 0.99

12 15 1.5e-05 0.002 20.0 1.5 3 23 933 953 932 953 0.98

13 15 0.15 21 7.4 5.6 2 23 960 982 959 982 0.95

14 15 0.68 95 5.4 0.1 1 20 989 1008 989 1012 0.88

15 15 0.0037 0.51 12.5 2.8 3 23 1021 1042 1020 1042 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.1	5.8e+02	2.9	0.6	1	23	158	181	158	181	0.87
2	15	0.54	75	5.7	0.5	4	21	261	278	260	279	0.93
3	15	0.74	1e+02	5.2	0.5	2	23	290	312	289	312	0.92
4	15	0.84	1.2e+02	5.1	5.7	2	17	350	365	349	370	0.86
5	15	0.49	69	5.8	1.5	1	23	375	397	375	397	0.97
6	15	1.3	1.9e+02	4.4	1.0	1	20	674	692	674	694	0.82
7	15	1.3	1.9e+02	4.4	2.5	1	23	706	728	706	728	0.95
8	15	0.041	5.8	9.2	0.3	2	23	734	755	733	755	0.96
9	15	0.91	1.3e+02	5.0	7.5	2	23	840	861	839	861	0.95
10	15	0.0095	1.3	11.2	0.5	2	23	877	898	876	898	0.96
11	15	6e-07	8.5e-05	24.4	2.7	1	23	904	926	904	926	0.99
12	15	1.5e-05	0.002	20.0	1.5	3	23	933	953	932	953	0.98
13	15	0.15	21	7.4	5.6	2	23	960	982	959	982	0.95
14	15	0.68	95	5.4	0.1	1	20	989	1008	989	1012	0.88
15	15	0.0037	0.51	12.5	2.8	3	23	1021	1042	1020	1042	0.96

Sequence Information

Coding Sequence: ATGaaacaagaagaaaaaacaatttCTTCGCCAGAAGTAGACACAAgtgtcctaaaaaaaattaatgcaTCATCAGCTAAGAAAGAGATtgaaccaaaaataaaatcatcaccAAGGAAATTTGAAATTAATATCGAAGTGGAAtgctgtgatgatgatgatgatgatgatcaattcGATAGCATTAGAGTCGAAAATGAGTTGGCACCAAATAACGCAATCCTGAGTACAACAACACATGCAAAACCTATATCGCTATCACGAGAATACATACTTCAAGAAGcggataatataataaaaacgtcACCAGATATCGCTGATCAAATTCTAAATGTCTACCTAAGGAACACTATAAGCTGGAACCTAAATGAAAAGCACAATCACACCTGGTATGACATTAAAATCCAGCACGTCTTGGACGAATGGAAGATTTGGCAGACCCGTAGTTGTCACCGAGAAGCTCCTCTGTTCTACAAATGTTATATCTGTACTAGATCTTGGTGGTTCCTGTCTGATTTCCGTGACCATCTCTCTACAGCTCATCCGGAAGCTGAGGGAGTGAAGATTCAACTGGAGAAATATGAACAGCACGAGGTTAACATAATAGCTTACCGTGACAGGCTCGTtgtatcatcattctcctgcccttatcccaattcagtTCGTGACAGGGTCGTTGTAATAAAAGGCATATACACCGAAGGACTTTGTCACCGCTGTGGCAAAGACTACGCTGCTCATGAAATAGGATACCGTGACCAAGGGAAGTTTTATAAGAATAAAGATTgtacaaaacagttttttacCTGCATGGGTCTACGAGACCATATGCAGAGTTGTCCGATCTGTAAAGTAGAGAAGCCGCTTGAGTGTAAAATTTGTAAGGTAAAATTGGACACCGAAGAAGAGATGAATAATCATTTAGCGTTGTGCCACTTGGTACGGTCTGATGTTCCGGTCCTGACCTATTATCTTAAATGTAGGAAGTGTTGGGAAAGATATTGTTGTAAATTTCTACACCAATGTGGCAAGAAAACAACGCTCTGTGAATGTCATCATTGCTTCCGGACTTTTACTAACAGGGTTTCTTTAAGTTTTCATACGCAACATTCAAATTGTGTGTATGAGTGTGAAATTTGTGATGAAATGCTGCAGAATAACTGCAAGAAGTATGAGCATATGCTGTCTCATACGGATAAGTTCATGTTAGTAAGGAAATGTCATTGGTGTACGGATCTGAATGTTTTCTTGAACTATGATGATGCTGCGGAACATGCGGAGAGGATACATGTGTCTGAGGGTGTGGAACCGCTATTCTATTTTCCTAAACTTGTCGTACCATCATCCTGCGTATATCAGGCGTTGGCAGAACAAGAAGCATTATTAGGTGaacaagaaacaaaagaaaatggAAAAGAATTGGTATCAGCAGAAGAACAGAAAATGAATGACTTCCCAATGGGCTTTTTTGTCAaagACCGCTTTCCTTTGGATAGCGCTCCTTCAAAGCAACAGGACGGACCCCAATCGGTTCACATTCAAGAAGAACCGGTGGAGTACCAAGACTACATAGAAGAACAAGAGAGTCCAAGACTTGTTATAAAAGAAGAACCATTAGAAGTAACAGAAACTCAAATACAAGACCCAGAAACAGACAACTTCGAACCCCAAATAACAGTAAAACAAGAATTATATGCAGACGAAGAATTAGATGAAGAATACGACGGAGACATAATCAAACTCAACTTTAATATAGAAGACTTGTTGGTGAAACAAGAATCTATAGAAAACGATGGACAAAAATCTCAATCACAAACAGAAGAATCACAAGATTCCCAAGACTTTCCTAAACCGATTAAAGAAGATGAAAATTTACAAGACTGGTCaatggaagaaaaagaagaTGAATCTGCGTTAATACTAGACGAAGACGAAGGGTCCATAGAAGCAGATGAAGACTCTATTCTAGAACCAGAAGTAATAATAGGTAGAGGAAATGcgagaaaaaagaaacttaaaTACCGTTGCTCTAAGTGTGGTTTCACAGCGAATCACAAAGAGTACCGGGTTCATATAGACTATGACTGTGTAAAACATCCGTTTAGAAACAGGGATTACTACTGTTCCAAGTGTAAAGGGATTTTTAAGTCTATGAAGAAGTATTTGTCACACTTTGAAGTGCATGGGTATAAGACCAAGtcttgcccggattgcctggtTGAATTTGAGAATTATTCGGGCTTGGCTACCCATGTGCATTCGCATGTAAAACATAATTTTGTGAGGGTGAAATTGATTACGATTGCAGGTAGAGCAATGACCAAACCTGACTATCGATGCAAGAAATGCTCTATAACGGTACCTTTGTGCGATTTCTTTGAGCATTGGGAGTTACATATAAACGCACAGCCTACGCATCCTATAAAGGTTACATCTAGGCCTCCTAGGCAGGAACAGGGCGAACTACATGACACTATCATAAAGGAGTGCATCGCCCGTATCCACAAGACGCCGAAAGAATGCAACCATTGTCACCGTCGGTTCAACCGAGTCAACGAGTGCAAGAGACACATTATAGAACATCTCCTAGTGGACGCTTACAACCAGAAACACATATACAAGGAGCTGAAGTGCCAAGTCTGTGACACTGGCTTCGCTACCCCAGAAAAATATAAGTTTCACATGCGAGACCATGCATCGTTGCCAGTGTACAAGTGTGAATTGTGTGATAGGACTTTCAGTGATTCAAGTAACTTTACTAAGCATAAAAAAGTGCATAACTTAAAAGTGATTCTATGTGATTTGTGCGGGAAAAAGTTCCAGTCTAAAGTGTCTTTGGAGAAACATATGAAGaaACACGAAGCTACCGAGCCGGTTACTTGTGAGCAATGTAACAAAATCTTCTATTTCGATTCTTGTTACCGTCGTCACGTGCGGCACTTccatgaaaaacaaaataatggcTACCGATGCCCAAACTGCGGCCTGCGATTGGAAACCTTAAAGGCCAAATGGGACCATATGTGGAATGTACATAAGGAACGAAAGCAAAAAGCAGACTGTCCGATATGCCATGAATCCTTTAGGAAGTTCTCCGACGTTCGTGCCCATGCTAGAAACTGCCATTCAATGCAAGTTTCTGTACTAAGTGTCAATAAAGCTAGTAATTCGGTTGCTTTAGAGAAGATTATGAAGAAATCGCCGACCATTAAACCTGGTCGTCCAAGTCAAGTGGAGACTTTAGTTGTCTATGATTCTGAATAG
Protein Sequence: MKQEEKTISSPEVDTSVLKKINASSAKKEIEPKIKSSPRKFEINIEVECCDDDDDDDQFDSIRVENELAPNNAILSTTTHAKPISLSREYILQEADNIIKTSPDIADQILNVYLRNTISWNLNEKHNHTWYDIKIQHVLDEWKIWQTRSCHREAPLFYKCYICTRSWWFLSDFRDHLSTAHPEAEGVKIQLEKYEQHEVNIIAYRDRLVVSSFSCPYPNSVRDRVVVIKGIYTEGLCHRCGKDYAAHEIGYRDQGKFYKNKDCTKQFFTCMGLRDHMQSCPICKVEKPLECKICKVKLDTEEEMNNHLALCHLVRSDVPVLTYYLKCRKCWERYCCKFLHQCGKKTTLCECHHCFRTFTNRVSLSFHTQHSNCVYECEICDEMLQNNCKKYEHMLSHTDKFMLVRKCHWCTDLNVFLNYDDAAEHAERIHVSEGVEPLFYFPKLVVPSSCVYQALAEQEALLGEQETKENGKELVSAEEQKMNDFPMGFFVKDRFPLDSAPSKQQDGPQSVHIQEEPVEYQDYIEEQESPRLVIKEEPLEVTETQIQDPETDNFEPQITVKQELYADEELDEEYDGDIIKLNFNIEDLLVKQESIENDGQKSQSQTEESQDSQDFPKPIKEDENLQDWSMEEKEDESALILDEDEGSIEADEDSILEPEVIIGRGNARKKKLKYRCSKCGFTANHKEYRVHIDYDCVKHPFRNRDYYCSKCKGIFKSMKKYLSHFEVHGYKTKSCPDCLVEFENYSGLATHVHSHVKHNFVRVKLITIAGRAMTKPDYRCKKCSITVPLCDFFEHWELHINAQPTHPIKVTSRPPRQEQGELHDTIIKECIARIHKTPKECNHCHRRFNRVNECKRHIIEHLLVDAYNQKHIYKELKCQVCDTGFATPEKYKFHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVILCDLCGKKFQSKVSLEKHMKKHEATEPVTCEQCNKIFYFDSCYRRHVRHFHEKQNNGYRCPNCGLRLETLKAKWDHMWNVHKERKQKADCPICHESFRKFSDVRAHARNCHSMQVSVLSVNKASNSVALEKIMKKSPTIKPGRPSQVETLVVYDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00446726;
90% Identity: -
80% Identity: -