Dmen046180.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438913.1:7655384-7666826[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.064 8.9 8.6 0.9 1 23 489 512 489 512 0.96 2 18 0.064 8.9 8.6 0.9 1 23 537 560 537 560 0.96 3 18 0.064 8.9 8.6 0.9 1 23 585 608 585 608 0.96 4 18 0.064 8.9 8.6 0.9 1 23 633 656 633 656 0.96 5 18 0.064 8.9 8.6 0.9 1 23 681 704 681 704 0.96 6 18 0.064 8.9 8.6 0.9 1 23 729 752 729 752 0.96 7 18 0.064 8.9 8.6 0.9 1 23 777 800 777 800 0.96 8 18 0.064 8.9 8.6 0.9 1 23 825 848 825 848 0.96 9 18 0.064 8.9 8.6 0.9 1 23 873 896 873 896 0.96 10 18 0.064 8.9 8.6 0.9 1 23 921 944 921 944 0.96 11 18 0.064 8.9 8.6 0.9 1 23 969 992 969 992 0.96 12 18 0.064 8.9 8.6 0.9 1 23 1017 1040 1017 1040 0.96 13 18 0.064 8.9 8.6 0.9 1 23 1065 1088 1065 1088 0.96 14 18 0.064 8.9 8.6 0.9 1 23 1113 1136 1113 1136 0.96 15 18 0.064 8.9 8.6 0.9 1 23 1161 1184 1161 1184 0.96 16 18 0.064 8.9 8.6 0.9 1 23 1209 1232 1209 1232 0.96 17 18 0.064 8.9 8.6 0.9 1 23 1257 1280 1257 1280 0.96 18 18 0.064 8.9 8.6 0.9 1 23 1305 1328 1305 1328 0.96
Sequence Information
- Coding Sequence
- atggcgtcgttcggTGTATTGTCCACTTTCGATCATAATGTACACGAATGGAAAACATACAAAGGTAGAATCACACAGTGGTTCATCGCCAACGACATCGACGCCAAAAGTGACCCGACAGGTACAAGAAGGCGAGCGATTCTGCTCAGCGCACTCCATGACGGTACCTACAAACTGGCAGCGGATTTGGCGTTGCCAAAAGAAGTACAGGTGGTGCCGTATGAAGGACTCATCAAGTTGTTGGATGATCACTTCACCCCGAAAAGGTGCGGGTTCAGTGAACGACATAAGTTCTACTCGGCAACGCAGCAACCAGGCGAGTCACACACGCAATGGGCGGCAAGGCTGCGAGGACTCACCGCACATTGTGAGTTTAGCAATGTGGAGGAAGCATTACGAGATCGCTTCGTGATGGGAATGGTAGCGGGTCCAGAACGTGAGAAGTTGTTTGCCCGGGACTTGGAGAGCTTGACCTTGGCAAAAGCAGTGGAGGTCGCAGAGAGCGTCCGGTGCGCGCATGCAGGCGCCGCCGGCACCGCCACGCCATTTGCCCCAGCGGAACAGGTCCAGGTGTTCAAGATCGGAAAAGGACAAAATAGTGCTAAATCCATCAGTGCCACGAGTGATAAGTGTTCAGTGTGCGGTCGTCGCAATCACAAGTCGTCCGAATGTCGATTCGCGAAGTATAAATGTCAAAAGTGTAACGTTGTAGAGGGGGATGTGAGCGAGGACGACGATGGTAAGCCGCTTTTTAACATATGTTCAGCTCGGGGAGAACCTATGACAGAAACGGTTAAAATTAATGACAAAAGTATTCAATTTCAAATTGATAGTGGTTCAGCTGTTTCGGTAATATCGGAAGTGGATGCTTCTCCATACGGTCTAGGTGCAATTCTGTCGCAAGTAGATGGTGACGGCATAGAACGACCAATTTCGTTCGCGTCACGCACACTGAATTCTGCAGAAAAAAGATATTCACAGATTCAGAAAGAGGCGACTGCGATTATATTTGGGGTAAAGCGTTATCACCAATACTTGTACGGGCGATCAGAACCATTCACTTTACGCACTGACCACAAACCACTGATATCAATATTTGGTCCGTTTATGGGAATACCGGAGGTAACAGCTAACAGGTTGCAAAGGTATGCAATGTATCTAAGTGCGTATAATTATTCCATCGAATATGTTCGCAGTGCCGACAATAGCGCAGATTATCTATCACGGGCGAGTTTACATTGCGAGACTGAAAGGTCAAACGCAGAGGAAAGGGACAACACGcatgccgccgccgccgccgcacttGCTATAGACCGCGCGGCGTACGTTAACTTTGTGATCGAGGGTAATATGCCGGTGACCTTAGACGAGTTACGCGAACAAACCGCTAAAGATGTTATTCTAAAGAGGAACGCAGCGAAGCTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGGTACGTATGGGACAATATGGGTTAGTAAAGTACCACATCGTAGCGATGCACACAAGTGAGACACCTTACCAATGCCAGCACTGCACCGCGGCGTTCGGCTGGTACTCTAGCTTGTATCGACACGTCAGGGAGGTGCATTACAAGTTGCGGCTACAGCCCCGGAAGCCCAAGAAAGGCAAGAAAGACGACATCCACCCCTCGCTGCTGCCCAATCTGCCCAGTCTGCCCAGTGTGACCAGTCTGCCCGCTGCCGGCCCGACCTAG
- Protein Sequence
- MASFGVLSTFDHNVHEWKTYKGRITQWFIANDIDAKSDPTGTRRRAILLSALHDGTYKLAADLALPKEVQVVPYEGLIKLLDDHFTPKRCGFSERHKFYSATQQPGESHTQWAARLRGLTAHCEFSNVEEALRDRFVMGMVAGPEREKLFARDLESLTLAKAVEVAESVRCAHAGAAGTATPFAPAEQVQVFKIGKGQNSAKSISATSDKCSVCGRRNHKSSECRFAKYKCQKCNVVEGDVSEDDDGKPLFNICSARGEPMTETVKINDKSIQFQIDSGSAVSVISEVDASPYGLGAILSQVDGDGIERPISFASRTLNSAEKRYSQIQKEATAIIFGVKRYHQYLYGRSEPFTLRTDHKPLISIFGPFMGIPEVTANRLQRYAMYLSAYNYSIEYVRSADNSADYLSRASLHCETERSNAEERDNTHAAAAAALAIDRAAYVNFVIEGNMPVTLDELREQTAKDVILKRNAAKLKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKVRMGQYGLVKYHIVAMHTSETPYQCQHCTAAFGWYSSLYRHVREVHYKLRLQPRKPKKGKKDDIHPSLLPNLPSLPSVTSLPAAGPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -