Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438909.1:6480041-6481225[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00071 0.1 14.7 1.2 1 22 158 179 158 182 0.91

2 7 3.5 4.9e+02 3.1 0.2 2 23 188 208 187 208 0.90

3 7 5.8e-06 0.00081 21.3 0.2 2 23 215 235 214 235 0.96

4 7 0.00011 0.015 17.3 1.0 1 23 241 263 241 263 0.99

5 7 6.8e-05 0.0095 17.9 1.7 1 23 269 291 269 291 0.98

6 7 0.0019 0.27 13.4 0.7 1 23 297 320 297 320 0.93

7 7 0.0072 1 11.6 0.5 3 23 328 349 326 349 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00071	0.1	14.7	1.2	1	22	158	179	158	182	0.91
2	7	3.5	4.9e+02	3.1	0.2	2	23	188	208	187	208	0.90
3	7	5.8e-06	0.00081	21.3	0.2	2	23	215	235	214	235	0.96
4	7	0.00011	0.015	17.3	1.0	1	23	241	263	241	263	0.99
5	7	6.8e-05	0.0095	17.9	1.7	1	23	269	291	269	291	0.98
6	7	0.0019	0.27	13.4	0.7	1	23	297	320	297	320	0.93
7	7	0.0072	1	11.6	0.5	3	23	328	349	326	349	0.95

Sequence Information

Coding Sequence: ATGTCAGGTTCTTACTTTATGTTGCAATTTCTGAAACAAAATCAGCTTAAGAAGCAGCAAGGGCAACGGGTAAATCAAAATACTGCAACTCGTCAAGAAAGCGATGTAAAAACAATCAGGACAAGTAATAAATGTAGGCTTTGTCTAAAAGAAGGTAACAAACCCATTTACAATTCGGATAGCTCTTTCAATATTGCAAAAGCTATACGGACATTTGCAGACATAGAATTAACTGAAAATGATGCATATCCTAAGCACTTGTGTACGAAATGCCACGCTTTTCTTCAGAATGCAGTAGTATTCCGGAAATCAGCTCAGGAAATTGACAAACAAATTCGTCAGACCCCAGCTCCGGATTCTGGTGGAGAATCCGGATGTGCAGAGTTCTCCACCGAATGTGCAGAGAATAATCCTGTCGATAAAAACGGTGACACTGAAATTCAAAATATAGAAATTGCCCAAAAAGCTAAATACAGTTGTAAACTGTGCAAGCTCAATTTCAAATCATCTAAAGAATTAGTTGCACACAAACAATCAAGGATACACAAGAATGTTCGCATTCGATGTCCTGTGTGCTACAGATTGTTGACAGCCCAGTTATATCAGAAGCATGTGGCCAGACACCAGTCTGCATCTCACCTTGTTTGTGATATATGTGGTAAAGTTTACCGGAAAGATAATTTGATCAGGCACTTACAGCTCCACAGCTTCGACCTACCTTTCAAATGCCAGATCTGCCCTTACCGAGGACGCTTTATGGAATCACTTAAAATCCACATGAGGACACACACTGGTAACAAACCTTTTTCATGTGACAAGTGCGAGTTAAGATTTTTAACTAGAAGCAATCTTAACAGGCATCTGTTAACTCATAAAAAGGAAAGACCTTTCAAGTGTCTTGAATGTGGAAGAGGTTTTTATACTAAAAGGGATATGGATATACATTTTAAGGCTGATCATGCTGGTCTGAGGGAGTTTGGTTGCAAGATGTGTGGCAATAAGTATGGCACTAGAAAGGCACTGATGAGACATGAACTGCGAGTTCATAAGAGGGATAAGATGGCAAAAGGCAGAATGCCGTTGTACCTTCAAGCTGGATATCAGAAACAAGATGAAGTTATGTCTAGCACATCGGTTGGTGTAAAACTGCTGTCAGATACATGTACACCTactacaataatataa
Protein Sequence: MSGSYFMLQFLKQNQLKKQQGQRVNQNTATRQESDVKTIRTSNKCRLCLKEGNKPIYNSDSSFNIAKAIRTFADIELTENDAYPKHLCTKCHAFLQNAVVFRKSAQEIDKQIRQTPAPDSGGESGCAEFSTECAENNPVDKNGDTEIQNIEIAQKAKYSCKLCKLNFKSSKELVAHKQSRIHKNVRIRCPVCYRLLTAQLYQKHVARHQSASHLVCDICGKVYRKDNLIRHLQLHSFDLPFKCQICPYRGRFMESLKIHMRTHTGNKPFSCDKCELRFLTRSNLNRHLLTHKKERPFKCLECGRGFYTKRDMDIHFKADHAGLREFGCKMCGNKYGTRKALMRHELRVHKRDKMAKGRMPLYLQAGYQKQDEVMSSTSVGVKLLSDTCTPTTII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00446600;
90% Identity: iTF_00445594;
80% Identity: -