Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438888.1:262806-272052[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.4 1e+03 2.1 0.1 2 8 196 203 195 219 0.68

2 8 0.0032 0.45 12.7 2.9 1 23 303 325 303 325 0.98

3 8 0.77 1.1e+02 5.2 2.1 1 23 332 354 332 354 0.86

4 8 9.9e-05 0.014 17.4 0.4 2 23 361 382 360 382 0.96

5 8 3.4e-05 0.0047 18.9 3.5 1 23 388 410 388 410 0.98

6 8 0.00022 0.031 16.3 2.1 1 23 416 438 416 438 0.96

7 8 1.5e-05 0.0021 20.0 0.9 1 23 444 466 444 466 0.97

8 8 0.00015 0.02 16.9 0.9 1 23 482 505 482 505 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.4	1e+03	2.1	0.1	2	8	196	203	195	219	0.68
2	8	0.0032	0.45	12.7	2.9	1	23	303	325	303	325	0.98
3	8	0.77	1.1e+02	5.2	2.1	1	23	332	354	332	354	0.86
4	8	9.9e-05	0.014	17.4	0.4	2	23	361	382	360	382	0.96
5	8	3.4e-05	0.0047	18.9	3.5	1	23	388	410	388	410	0.98
6	8	0.00022	0.031	16.3	2.1	1	23	416	438	416	438	0.96
7	8	1.5e-05	0.0021	20.0	0.9	1	23	444	466	444	466	0.97
8	8	0.00015	0.02	16.9	0.9	1	23	482	505	482	505	0.95

Sequence Information

Coding Sequence: ATGGCCGAAACGAGTACAATGAACTCCGATAATAAAGTGGAGCAAATCGAGAAGAAGGAAGACATGGAGAGCATCAAGACCGAGGTGGAAGTGTTGGTGAAGCACGAGCAGGTGGAGTGCGTGGCGTGCACGTCGCGCTGCCGGGAGTGCGTGGACATCCACTGCACCATGACGCGCGCGTCCGGCGCCAAGCTCAGCACCTTCCTGTACAAGTTCACGCAGGTCGACCTGGCTGGTCAAACCGCAAAGTTCATGTGCAGGAGCTGCTACGACCTCATCAACGTGCTGGAGCAGGCTGAGATCGAGTACATCAAGTTGAAGGAGGCTTTCGAAGCCATACTTGCAAAGAACCCCTTGTTCGAGTTGACTGCAGTGCAGCCTATCCGGCTTTCAGACGTGAAGGCAGAGTTCGACGCTGATGATGACGACGACTACGTGTGTGACaatgtggatgatgatgatggttcgGATGATGAACCACTGGCCACTCGGAGCAAACGAAGGAGATACAAAGttgagaaaaaaaagaaaaaagtaaccACAAACAAACGAAAAGTGAGAAGTAAAGCCAACAGTGACAGCTGGAAATGTGAAGATTGTGGAGCTAAGGGTACCAATGGATTCATAGGGCTAACAGCTCATAAGTTAGCTGAACACACTATAGAGGACCCTAATGCCTTGCTGCCAGAGGTCAAGATCGAAAACTCTGCTGAAGGATCACAAAGTCCCATATACAACAATGGATTTAGTAACTGTTTGAAAATAGAAAcctttgatgatgatgatgacagtatAGGTGTTGATGACCTCAGCAATGACATGACATCTATCAAGAAGAAATTAGGAAGACCTTTAAAGAGTAAAATGCTACCGACACAGCCTAGGATGAAGAAGACCAAAGTGGTGCATCAGTGTGACCAGTGTGATGCTAAATATACTTCTTTATCGCGACTGGAGCAGCACAAGCAGAAGCACGACGGCTCCAAGCCGCCCTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGCGCCTGCGACATACACATCGCGCTACATAAAGgTATAAGTGATTGGAAATGTGAAGAGTGCAATAAGTTATTCCCGTCTAAGAATGCGCTACAGAGGCACAACAATATACACACGGGCAAGTTAAACTATCAGTGCGACTTGTGCGGCAAGTCGTTCATCCACACGTCGTCGTTCAAGATGCACAAGCTGTCGCACTCGGGCGTGAAGCCGCACGCGTGCGACGTGTGCGGGCTCGCGCTCATGACGCGCTCGCACCTCAAGCGGCACAAGCGGGTGCACAGCGGGGAGAAGCGCCACGAGTGCGCCGTCTGCGGGAAGCGCTTCTCTGAGAGGTACAACCTGGCGGCACACAGCAAGTCGCACGAGGCGAGCGAGACGGCGGCTCGCGACCAGCCGCGCCGGAGACTGTTCCGGTGTACCTTCTGTGTGGAGCGGTTCGAGCGACGCTACATGCTAGAGCGGCACATGTCGGCAGTCCACGGGCGCACACTGGAGCGGCCGCCGCCCACTCCGCGCAACACTATGAGCAAGTTGCTGAAGGCGCAGGCGCAGCGCCGGGACCAAGCGCCCGCCGGGACTGatatcgaCACGAAAGACGACCGGAGTTCAGACTCCCGCACCACACCCATCACACCTCAGAAACTTATCGCGCAGTTATCCTCATCGAGTTCCATAGCGCAGAGCGCGTGGGGCAGCTCGTACGCGGCCGAGTTCCTGCGACACGAGTACCCGCACTGA
Protein Sequence: MAETSTMNSDNKVEQIEKKEDMESIKTEVEVLVKHEQVECVACTSRCRECVDIHCTMTRASGAKLSTFLYKFTQVDLAGQTAKFMCRSCYDLINVLEQAEIEYIKLKEAFEAILAKNPLFELTAVQPIRLSDVKAEFDADDDDDYVCDNVDDDDGSDDEPLATRSKRRRYKVEKKKKKVTTNKRKVRSKANSDSWKCEDCGAKGTNGFIGLTAHKLAEHTIEDPNALLPEVKIENSAEGSQSPIYNNGFSNCLKIETFDDDDDSIGVDDLSNDMTSIKKKLGRPLKSKMLPTQPRMKKTKVVHQCDQCDAKYTSLSRLEQHKQKHDGSKPPYICEVCGAHYKHKRACDIHIALHKGISDWKCEECNKLFPSKNALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGVKPHACDVCGLALMTRSHLKRHKRVHSGEKRHECAVCGKRFSERYNLAAHSKSHEASETAARDQPRRRLFRCTFCVERFERRYMLERHMSAVHGRTLERPPPTPRNTMSKLLKAQAQRRDQAPAGTDIDTKDDRSSDSRTTPITPQKLIAQLSSSSSIAQSAWGSSYAAEFLRHEYPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00908327;
90% Identity: iTF_00446580;
80% Identity: -