Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438911.1:7435986-7438164[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8 2.6e+02 4.0 0.4 2 23 207 229 206 229 0.89

2 9 0.00095 0.13 14.3 0.6 1 23 234 257 234 257 0.91

3 9 1.5e-05 0.0021 20.0 2.8 2 23 261 282 260 283 0.93

4 9 9.5e-05 0.013 17.5 0.6 2 20 287 305 286 307 0.94

5 9 1.4e-05 0.0019 20.1 3.1 1 23 323 346 323 346 0.96

6 9 0.045 6.2 9.1 0.8 1 23 352 374 352 374 0.91

7 9 1.7e-06 0.00023 23.0 0.9 1 23 380 402 380 402 0.98

8 9 1.2 1.6e+02 4.6 7.4 1 23 408 430 408 431 0.96

9 9 0.012 1.7 10.8 3.0 2 23 437 458 436 458 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8	2.6e+02	4.0	0.4	2	23	207	229	206	229	0.89
2	9	0.00095	0.13	14.3	0.6	1	23	234	257	234	257	0.91
3	9	1.5e-05	0.0021	20.0	2.8	2	23	261	282	260	283	0.93
4	9	9.5e-05	0.013	17.5	0.6	2	20	287	305	286	307	0.94
5	9	1.4e-05	0.0019	20.1	3.1	1	23	323	346	323	346	0.96
6	9	0.045	6.2	9.1	0.8	1	23	352	374	352	374	0.91
7	9	1.7e-06	0.00023	23.0	0.9	1	23	380	402	380	402	0.98
8	9	1.2	1.6e+02	4.6	7.4	1	23	408	430	408	431	0.96
9	9	0.012	1.7	10.8	3.0	2	23	437	458	436	458	0.95

Sequence Information

Coding Sequence: ATGGCATCAATAAATAACGCTTTGAGCAGCATTATAAATAGGAAAAAAGATTTCTGCTGTTTGTGTTTGTGTTCTTTAGGAGGGGAACCGCTACGATTAAATGATGAAGTTGTAGTTAGTATAAATAGCTATGAATACGAAACAGTCATTTCAGaagtttttaactttgtttttgATCAGGAGatgtgtacctacataaatacatTCAATGCAATGTGTAATCATTGCACACAATCTGCAATAAGTTGCTATAGATTCAAACATATGTGTTTGAAGAATGCTGAATATCTTAATGATGTTATTGATGGAGTCGCAAATAACTTTGAATATgctacaaatgaattaaatgaCTGCACATCTCTGTTTGTCTCCCTTAATCTGCAAGACATGACTAGCAAACAATTTTATGATACAAAGAAGATGGTGAACCCTAGAGCCGCTTTACGTAGATTTCATAAACTTGACAATACCAATAAAATTAAGGTTGAAGACACAATAAaccaaaaaaagataaaaaaagaaGCAGATTATGAAAACAGTTCTACAAAAAGAACTAGAAAAAAGATTGACTTTCCTGATAGTGAAATATTGTTTGATAAGAACAACCCTGATTTAATAAGATGTAGAGAATGTTACAAAGAATATCTAACTATTTGGAATTTGAGGAATCATTTTGTACGAGTACATGCTCCTAAAATTTTTAAATGTCCTGAATGCCCACGATGTTATGGTTCTGCAGCATTCCTGGAAGCTCACAAGTCAGACAGTCATTGCACGGTTGTCTGCAGTGAATGTGGAAAAACTTTCAGTAATAAGCATACTCTAAAGATGCATGAGTTGGGCCATCACTTGAGCTTGGTTTGCCAAGATTGTGGCCGAaagtacaaaaacaaaactacatTCAAAAAACATATTGACCTGAATGTTTGTGGAAAAGAAACCAGGGCTAATCCAGCTGAGGCTACATTCACTTGTGATTATTGTAATAAGAAATACACCCAAAAAGTATCTTTAAGAGTTCATATTCAACATGAACATGGAAATTATAAGTCTCATGTTTGCGAGTGGTGCGGGAAGAAATTTTGGGCACAGAGCCGATTAAAAGCTCACTCCGTAAAACACACCAGAGAGAGAAACTTCCCTTGCACAATATGTGGAAGAAAATTTGTCACGAGAGAGTCTCTCTTGTATCACACAAGAACCCATACGGGTGAGAAGCCTTATAAGTGCCCGCATTGTGAATGTAGATTCCTTTCTGCTTCCCGTAGAACAGATCATATCAAACGTCACCACCTAAGAGCCACACTAGAATGTGACATTTGCCATAGCAAATTTAATTCAAACACTTTCTTAATGAAACATAAAAAGGCTCATATAAAATCGCAAATCAAGGACAATTTAGATGATTTAACACTAAAAGATGTAAAACTAGCCATGAAACGAAATTACGACAGCCAACACAAAACATTAAAGGAGGCAAATTGTGAGAGTAAACCAAGAGATCTTTGGCAGATAAGTAAAAATCACGAAGACACAAGTTTCCAGATAACTGCGGATTCCAGTGAAGTGGATTTAGTACAGTTTACTGAACAAGTTTATGAAGAGGATGATGAATCTCGACAGACTTTAGGCAATGAAAAAGTGTATTTAGAAGTGTCCGATGATGTTGATGACTATATAAGTATATTAGGTGTTTAA
Protein Sequence: MASINNALSSIINRKKDFCCLCLCSLGGEPLRLNDEVVVSINSYEYETVISEVFNFVFDQEMCTYINTFNAMCNHCTQSAISCYRFKHMCLKNAEYLNDVIDGVANNFEYATNELNDCTSLFVSLNLQDMTSKQFYDTKKMVNPRAALRRFHKLDNTNKIKVEDTINQKKIKKEADYENSSTKRTRKKIDFPDSEILFDKNNPDLIRCRECYKEYLTIWNLRNHFVRVHAPKIFKCPECPRCYGSAAFLEAHKSDSHCTVVCSECGKTFSNKHTLKMHELGHHLSLVCQDCGRKYKNKTTFKKHIDLNVCGKETRANPAEATFTCDYCNKKYTQKVSLRVHIQHEHGNYKSHVCEWCGKKFWAQSRLKAHSVKHTRERNFPCTICGRKFVTRESLLYHTRTHTGEKPYKCPHCECRFLSASRRTDHIKRHHLRATLECDICHSKFNSNTFLMKHKKAHIKSQIKDNLDDLTLKDVKLAMKRNYDSQHKTLKEANCESKPRDLWQISKNHEDTSFQITADSSEVDLVQFTEQVYEEDDESRQTLGNEKVYLEVSDDVDDYISILGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00445581;
90% Identity: iTF_00445581;
80% Identity: -