Dmen045612.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia mendica
Gene Symbol
-
Assembly
GCA_949316265.1
Location
OX438913.1:1712051-1728772[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 46 5.6 7.9e+02 2.5 0.2 1 23 275 298 275 298 0.83
2 46 0.0054 0.76 12.0 1.1 2 23 306 327 305 327 0.97
3 46 2.5 3.5e+02 3.6 3.0 1 23 331 353 331 353 0.97
4 46 0.91 1.3e+02 5.0 8.2 1 23 358 380 358 381 0.95
5 46 0.011 1.6 10.9 0.1 3 23 388 409 388 409 0.98
6 46 0.017 2.3 10.4 0.1 3 19 418 434 417 436 0.95
7 46 0.023 3.3 10.0 1.7 1 23 443 466 443 466 0.94
8 46 5.9e-06 0.00083 21.3 1.7 1 23 472 495 472 495 0.98
9 46 9.9 1.4e+03 1.7 0.0 2 9 511 518 510 523 0.85
10 46 0.42 59 6.0 1.2 8 23 534 550 529 550 0.90
11 46 9.9 1.4e+03 1.7 0.0 2 9 566 573 565 578 0.85
12 46 0.42 59 6.0 1.2 8 23 589 605 584 605 0.90
13 46 9.9 1.4e+03 1.7 0.0 2 9 621 628 620 633 0.85
14 46 0.42 59 6.0 1.2 8 23 644 660 639 660 0.90
15 46 9.9 1.4e+03 1.7 0.0 2 9 676 683 675 688 0.85
16 46 0.42 59 6.0 1.2 8 23 699 715 694 715 0.90
17 46 9.9 1.4e+03 1.7 0.0 2 9 731 738 730 743 0.85
18 46 1.4 1.9e+02 4.4 0.7 8 23 754 770 749 770 0.90
19 46 9.9 1.4e+03 1.7 0.0 2 9 786 793 785 798 0.85
20 46 1.4 1.9e+02 4.4 0.7 8 23 809 825 804 825 0.90
21 46 9.9 1.4e+03 1.7 0.0 2 9 841 848 840 853 0.85
22 46 1.4 1.9e+02 4.4 0.7 8 23 864 880 859 880 0.90
23 46 9.9 1.4e+03 1.7 0.0 2 9 896 903 895 908 0.85
24 46 1.4 1.9e+02 4.4 0.7 8 23 919 935 914 935 0.90
25 46 9.9 1.4e+03 1.7 0.0 2 9 951 958 950 963 0.85
26 46 1.4 1.9e+02 4.4 0.7 8 23 974 990 969 990 0.90
27 46 0.42 59 6.0 1.2 8 23 1029 1045 1024 1045 0.90
28 46 9.9 1.4e+03 1.7 0.0 2 9 1061 1068 1060 1073 0.85
29 46 1.4 1.9e+02 4.4 0.7 8 23 1084 1100 1079 1100 0.90
30 46 9.9 1.4e+03 1.7 0.0 2 9 1116 1123 1115 1128 0.85
31 46 0.42 59 6.0 1.2 8 23 1139 1155 1134 1155 0.90
32 46 9.9 1.4e+03 1.7 0.0 2 9 1171 1178 1170 1183 0.85
33 46 1.4 1.9e+02 4.4 0.7 8 23 1194 1210 1189 1210 0.90
34 46 9.9 1.4e+03 1.7 0.0 2 9 1226 1233 1225 1238 0.85
35 46 1.4 1.9e+02 4.4 0.7 8 23 1249 1265 1244 1265 0.90
36 46 9.9 1.4e+03 1.7 0.0 2 9 1281 1288 1280 1293 0.85
37 46 1.4 1.9e+02 4.4 0.7 8 23 1304 1320 1299 1320 0.90
38 46 9.9 1.4e+03 1.7 0.0 2 9 1336 1343 1335 1348 0.85
39 46 1.4 1.9e+02 4.4 0.7 8 23 1359 1375 1354 1375 0.90
40 46 9.9 1.4e+03 1.7 0.0 2 9 1391 1398 1390 1403 0.85
41 46 1.4 1.9e+02 4.4 0.7 8 23 1414 1430 1409 1430 0.90
42 46 9.9 1.4e+03 1.7 0.0 2 9 1446 1453 1445 1458 0.85
43 46 1.4 1.9e+02 4.4 0.7 8 23 1469 1485 1464 1485 0.90
44 46 0.0076 1.1 11.5 0.6 2 23 1501 1522 1500 1522 0.96
45 46 3.3e-06 0.00046 22.1 1.6 1 23 1528 1550 1528 1550 0.99
46 46 0.0004 0.056 15.5 0.6 1 23 1556 1578 1556 1578 0.96

Sequence Information

Coding Sequence
ATGTCTTTAGTTACGTTAAAAAACGAGTTCAATGAAGATATACTAGCCTGCAGAGCTTGTTTGGCTACAAATAGGAAGTTGTACAGCTTACACCAGGACGAAGTTTTGAAAGCTTACAAGAATCTTACTGGACAAGACGTCTCTCCTTACGACACATTACCGCAATACATTTGTAACTGCTGCACTATTCTCTTACTGAAGTATCACACATTCAGAGATCAATGTCACAGAGCTACTAACTATTTAGAAGATGCCAGAATAAggaataaaaatGTTACAACAGAGTATATAAACAGTTTCCAACCTTACATACAATACAAAACATCAGAAATAAAGCAAATAAACATCAATGAAAATGATATAACAACTGAATCAATTTCAAACTAcaaaagtgatgaaaatgatgatcaTTTTGACAATTACGATGACCACTACACAAACTCATCACCGATTaatgaaaacataaaaatattcacTGAAACGGACAACAAGAAAAATGATCAATACGCATACTCCTTGTCAAATACGGAAAACCTGAAAATATATGCTGAAACAGTCACAATCAAGATTGAAAATGACTTGCCTATTGTACCTGAAACACTTAACAGGAATGtccacaaaaagaaaaaaagtacaacttcaagaaagaaaaatacaaaaaagtccGAGACTTTAAAAAAGAAAGGAAAGTTCTTTGAAACTAAAGAGAATATGTCAGATTTCGAGAAGGCGTTTGATGTAGAAATTACAGTTTTAAGTGAAGATCAACAAATGAAGGATGTCTTGGATAGAAAGTCTAGTTCGAATTACTTGCACAGCCCTTATAAGTGTGAATTGTGTTTTAAGGGCTATATGGGGGCTGATATTTTGGATAAACATGTTTTGTCGCAGCATGATCCGAGTCGCGGTAGTGTGGTTTGTGAATTCTGTCAATTTCGCTACAAAGATCGAAGAGGATTAAATCAACATCTAAAGAGTCATCGACTAAAGTTCTCTTGCAAACAATGCTCTTATATTTCCAGAACCACATTCAATGCAAAAGAACATTTTAAAATGCATGGCGGTCAAATGCATGAATGTCGGCATTGTGGCAAATCTTACGAAAAGCTATCAAGCCACTTATCGCACCTACGTATCCACCACCCGTCTGAGTTCATCTGGTGCGACGTGTGTGGAGAGGCCTTCATAGGCTCCTTCGGTCTCAACGCGCACAAGAAGAGGGCGCATCGACACCTCCCCCTGCCCTCTGCCTGTCCCGCTTGCAACAAGCAGTTCATCAACAACGCAGCGCTACAACGTCACTCCTCACTGGGACGTTGTACTGAACACACGTGTCTACATTGTGGGGAGCCCTTCGATGAAGCGCTGCACTTGAGAGACCATCTGTTGGAGACACATCGCAGTTGCAAGGTTTATTCTTGTGAGAAGTGTGACAAGACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGAAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGAAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGAAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGAAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTAGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGAAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGAAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGTGAGCAGGAAGAACGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTGTGTGGCAAGACCTTACCGGTGAGTGTTTATATTTAcgttttgtcccactgctggacagagACGTTTACCCGGGAGTCGTTATACAGCGCGCACTACAGGAGAATACACGTCGACTGCAAAGATAAAGCGAGCAGGAAGAAGGAGCGCCCGTGGGTCTGTGAAGTTTGTGGCAAGACCTTACCGAATAAATGCGTATTACTGTACCATCAGAGAAACCACACTGGTGAGAAACCGTACCAGTGTACGCAATGCCCCAAGAGCTTCACTATGAGGAAATTACTACAGtCTCATCTAAGGGTACACACAAGTGAACGACCCTACATCTGCAAGTTATGCCCAAAAGCGTTCAAGGGATTATCGGCTTTAAGAACACATGAACATATACACTCGGGAGGTCAACCAAAAACATTGAAGAACAGAATAATACAGTAG
Protein Sequence
MSLVTLKNEFNEDILACRACLATNRKLYSLHQDEVLKAYKNLTGQDVSPYDTLPQYICNCCTILLLKYHTFRDQCHRATNYLEDARIRNKNVTTEYINSFQPYIQYKTSEIKQININENDITTESISNYKSDENDDHFDNYDDHYTNSSPINENIKIFTETDNKKNDQYAYSLSNTENLKIYAETVTIKIENDLPIVPETLNRNVHKKKKSTTSRKKNTKKSETLKKKGKFFETKENMSDFEKAFDVEITVLSEDQQMKDVLDRKSSSNYLHSPYKCELCFKGYMGADILDKHVLSQHDPSRGSVVCEFCQFRYKDRRGLNQHLKSHRLKFSCKQCSYISRTTFNAKEHFKMHGGQMHECRHCGKSYEKLSSHLSHLRIHHPSEFIWCDVCGEAFIGSFGLNAHKKRAHRHLPLPSACPACNKQFINNAALQRHSSLGRCTEHTCLHCGEPFDEALHLRDHLLETHRSCKVYSCEKCDKTFTRESLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRKSLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRKSLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRKSLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRKSLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCSKTLPVSVYIYVLSHCWTETFTRKSLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRKSLYSAHYRRIHVDCKDKVSRKNERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPVSVYIYVLSHCWTETFTRESLYSAHYRRIHVDCKDKASRKKERPWVCEVCGKTLPNKCVLLYHQRNHTGEKPYQCTQCPKSFTMRKLLQSHLRVHTSERPYICKLCPKAFKGLSALRTHEHIHSGGQPKTLKNRIIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-