Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438903.1:9614675-9619883[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.7e-05 0.0024 19.8 1.1 1 23 1363 1385 1363 1385 0.97

2 8 0.00091 0.13 14.4 2.8 1 23 1391 1413 1391 1413 0.94

3 8 0.00084 0.12 14.5 4.6 1 23 1419 1442 1419 1442 0.97

4 8 3.7e-05 0.0052 18.8 0.8 1 23 1449 1471 1449 1471 0.98

5 8 1.4e-06 0.0002 23.2 0.3 1 23 1476 1498 1476 1498 0.97

6 8 0.0011 0.16 14.1 2.4 1 23 1507 1532 1507 1532 0.93

7 8 0.00011 0.015 17.3 0.5 1 23 1538 1560 1538 1560 0.97

8 8 0.092 13 8.1 5.3 2 23 1566 1587 1565 1587 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.7e-05	0.0024	19.8	1.1	1	23	1363	1385	1363	1385	0.97
2	8	0.00091	0.13	14.4	2.8	1	23	1391	1413	1391	1413	0.94
3	8	0.00084	0.12	14.5	4.6	1	23	1419	1442	1419	1442	0.97
4	8	3.7e-05	0.0052	18.8	0.8	1	23	1449	1471	1449	1471	0.98
5	8	1.4e-06	0.0002	23.2	0.3	1	23	1476	1498	1476	1498	0.97
6	8	0.0011	0.16	14.1	2.4	1	23	1507	1532	1507	1532	0.93
7	8	0.00011	0.015	17.3	0.5	1	23	1538	1560	1538	1560	0.97
8	8	0.092	13	8.1	5.3	2	23	1566	1587	1565	1587	0.97

Sequence Information

Coding Sequence: ATGTCGACAGCGACAAGCTGCAAAATCGATATTGGTCGTTTAGAAGGAAAAGAAAATTGGTCAACGTGGCGATACACGACAGCATCTCCTGATGATTTTGCTAAGTATGAAAAGGAGCTACAAAGGTATAATGAAATAGACAGTGCAGCAATGTTAATTTTGATGGCCAATATGTCAGATGTTACTCTACAAAAAGTGATGAGGTTGAAGACAGCAAAAAAGGTCTGGGACGAACTACACACTTTATTTGACGGCACATCTGAAGACAAGAGCTACATTCTTTGCTACAGTTTCTTCGGATATCGTAAGGATTCTTCACATGACATGTCTATGCACATTTCAAAGCTGAAACAATTATGGCACGAATTAAAAGAAGAACTAAAGAAAGGTGAAGAAAAATGTGATCTTCCAGAAATTTTACTAATTTGTAAAATACTAGAAACACTACCTGATGAAAGTTACTTCTCTTTCAAGTCAAGTTGGATGCTAATGTCTAAAAAAGATAGAAACATCGACAATTTAACAGCTCAAATTTGCGCTTATGAAAGGTCACTCACAACCAAAGAAGGAAATACTGAGGCATTGATTGCTCAAAGCCATAAACATATTAAAGTCAAGAAGAAATGCGGCTATTGCGGAATATTTGGTCATAAAGTCAGAAAATGTCATAAGTGGATATCGGACGGTAAACCTCCTAAGCCACCTAAACCATCTACAAGTCAAATTCGAGATACGAATATGACAATTGCGCTGATGCAGGTTAAGACCAATGAAGCGGTCAATATTATTGAAGGAGATCTTGAAAATTGGTACGTGGACAATGGTGCAACAAGCCATGTTACTGGACGGAACGATATATTTTCAAGTTTTCAATACTTCAATAACAACCAAACGGTAACAACTGCTAATGGCTCTACAACACAAGCAATTGGTAAAGGTACAGTTGATTTGATAGCCGAAGTAAATGGTAGACAAGAGAAAATTAGACTATGTGATGTATGGTATGTACCAGAGATACGAAGAAATTTATTTTCTGTACTCGCTGCACAAGACAAACTTGAGAACAGTGTTTTCATATCGGAAAGAGAATCTTGTTTATTGAAAGTTaaagataaaatatatttaattggcAAACGCGTCAAGAACGGAGGTCTCTACAAGCTGAATGCGCAAGCTATTAGAAACGTAACACCTGAATTGAACACTCTGTcaacagaaaatattttacaactttATCATGAAAGATTAGCTCACCAGAATAAAAGACACGTTaaagaaattattgaaaaagAATTTGGTATTAAAGTCAAACTCGATTCTGAATTATGCACAGGATGTGTTTATGGGAAGGCACACAGACGTAAATTTGGAACTAGAGAAAGATCTAAAGCACCAGGCGAGATTATACACACTGATGTATGTGGTCCGTTTCCTAATTCATTCAAaaagtttcattattttgtactaTTTAAAGATGACTACAGCAAATATCGTCAAGTTTACTTTATTAAGCATAAATACGAGGTCAAAGAAAAACTCGTGCAGATGATCAAAGAAACGAAGAATGCTGGACATGAGATAAAAACAATTCTAAGCGATAATGGTGGAGAGTTTAATAATGAGGCCGTTAGAAAAGTTTTGGAATCCAATGGTATTCTACAACGCTTAACAATGCCATATACGCCTGAACAAAATGGGTGTAGTGAAAGGGAGAACAGAACTCTCGTTGAAGCTGCTCGTACTATGATGTATGCACACGAAGAACTTCCACTTGCCTGTTGGTCAGAGCTTATCAATACTGCCGCTTATATTTTAAACAGAACTGGACCGACAACTGTAGAAGGAAAGTCACCATTTGAGTTATGGTTTGGTAAAAAGCCTGAAATCAAACATTTGAGAGTTATTGGAACAGAATGTTATGCTCATATTCCTAAACAAAGACGTACAAAATTGTCGAAGAAAACTCAAAAATGTATACTCATTGgatatgatggtgatgatggttACCGGTTACTGAGTTACGAAAATGGTTCTGCAACATTAATCAGATCAAGAGATGTAACGTTTAATGAATCTATCATTAGATCAATTGGGTTAGAATCCGATGTCGATACAACAAAAGAAGAAAATTCTGCGACTGACATAGAGATTCACTTTCCAATGACGAATGATAATCATCCAGTTTTTGATGCAAGGGAGGATGTATCACGTGATGAAGGTATAGCAAGTATGCCTCAAATCCCGAATGATGTTCCTATTCCCAGCTCTGGAGAAGACATTCAATCTACGTCAAATGATGTGAATGATATCCCTAATATAGAAGATGAATATTATGTTACACCAGAAGACTCTGATAATGAGCAAGCCTCTTCTGAAGAAACCCATAATACAAGAGTACTTCGAGACAGATCAGCTTTACGGATACCAGTGCGATTTGAAGACTATATTATGTCTGCTATTGTCAATGAGGGTGAGGAACCTAAGACATACAAGCAAGCATTAAAAAGTCTGCACAATGCAAAATGGCTAGAAGCAATGGAAAACGAGATGAAATCTCTTGAAGAGAACAATACTTGGATTTTAGTAGATCGACCAAAAGATCGTAAGCTAATTTCTTGTAAATGGctcttcaaaatcaaaactaatGCTGACGGAAGCCTTGATAAGTATAAAGCTCGACTAGTAGCACGAGGTTACACTCAAGAAGAGGGTGTCGACTATTATGACACATTTAGCCCTGTTGCAAGAATGACGACAATCAGATCGATTCTGAGTATCGCTGCAAATGAAGGATTGACTCTATCTCAATTTGACGTAGTCACTGCCTTTTTGAATGGTTTGTTAGATGAAGATATATATATGTCTCAACCAGAAGGCTTCAGTGATGGAACAAACAAAGTCTGTAAATTGAAGAGAAGTCTGTATGGTCTCAAACAATCACCTAGATGCTGGAACAAATGCATTGTTGATTATCTAAAAACGATTGAATTTAAGCAATGTGTTACTGATCCATGTTTATTCATAAGGAACAGAAGAGGAAATAAAATCATACTGGCACTATATGTGGATGACGGACTTATAGCTTCCACAAATCAAAAAGATGCTGTGGAGCTTATGGCAGAACTAAAACAAAAGTTCAAGATAACAACAAAGCCAGCTTCTCACTTTCTTGGTTTAGAAATTTACAAAGACAATGATGGTTCAATAAGTGTTTCACAAAAGCATTATGCTCAAAAGATTTTAGAACGCTTTGGTATGAGTGACTGTAAACCGGTCAGTACTCCAATTATTAAAGAAGAAGCACAACCAGATACGAAAAAGGATAACGACCATAAGTTTCCTTACAGAGAAGCTGTTGGTGCGCTGGCTTACCTAATGACAGGAACCAGACCAGACATTTCCTATGCTATAAGCGTCGTATCTAGATCACTTACTAATCCCTCAAGTCAAGATATTCATAAAGTCAAACGTATTCTTAGGTACATAAAAGGAACATTAGATTGTACTATTGTGTACAAGAAAGGATACAAACATGGCATTTTAGAATGTTTTAGTGACTCTGATCATGGTGGAGATAAAAACACAGGACGTTCAACATCTGGAATCATATGTATGTACGCAGGCGGAGTCATCTCATGGGCAAGCCGTAAACAATCATCAGTTGCTATCTCAAGCACGGAAGCTGAGCTTGTTGCAGCTAGCGAAGCAGCACGTGAAATCGTATGGCTGAAGAGATTGTTCAACGAAGTCACTAAACTAAATGAAACTCCTTCTCTTCAGATTGATAACGATGCAGCTATTAAGCTATCGCAAAACCCAGAGCTCCATCGTCGAACCAAGCACATTGCGATAAGACATTTTTATGTCAGAGAACTGGTCACTAATAATGAGCTAAAGAGGACTGATATAGATTCTATTGATATCAATGTTGTTTATCAAGACCATGAGTATGAGGTGCCACTGTTCAGTAATCACCCAACATTAGACTTTGAAAGCACTTTATCAGATAACAAATTGACACCACTGCCACCTGTTACTGAAATAACTTCTGGGGAGCAGCCTCAGCGAATAGAGGGAGAGAAGCGCTATGCCTGCACTGTTTGTACAAAGTCATTCACTAGACTGTATGGACTGCGCTATCACATGGCAAAACATACGGATACACGGAAGTACCTCTGTTCAAAATGTGGAAAGAGTTTCCACACTTCTAATGGATTAAAGCAGCATTCAATATCACATAGAGATATTGCTCAGTTCAAATGTGGTTTTTGTCATAAAACTTACAAATCAAGGCAGTCACTCAAGGAGCATTTTCGTGTGGCACATTCTAGCAACCGCATGCTATTTGTGTGTGTGACTTGTGGGAAAAGGTTCACAGCAAGATCAACCTTAAACATGCATGTTAAGACTCACAATGGAGAGAAGTTTGCATGCTCAAACTGTCCAAAGACATATACAAGGGCATCATATTTGAAAGCTCACATGCTGGTGCACACTGGTCAGCAGAAGCCCAGACCTTTCTCATGTTCTCACCAAGGCTGCGGTAGAAGTTTTCCAACAAAGCATTCCTTAGTGGTGCACATTGCACATGCACATACAACAGAAAGATCTCACAAGTGTGATGTCTGTTACAAGGGCTTTGCTACGGCAAGTGGATTAAAGATACACCTAGAATCTCACGGAAACAACATGGTGTCCTGTAACTATTGTTGTAAGAAACTAAGAACCAAGAGGGTATTACAGAAACACATGAAAACTCATGATGTTGATGCCAATGATATGATTTTAGAAACTGTAGACCAAGCTTATtag
Protein Sequence: MSTATSCKIDIGRLEGKENWSTWRYTTASPDDFAKYEKELQRYNEIDSAAMLILMANMSDVTLQKVMRLKTAKKVWDELHTLFDGTSEDKSYILCYSFFGYRKDSSHDMSMHISKLKQLWHELKEELKKGEEKCDLPEILLICKILETLPDESYFSFKSSWMLMSKKDRNIDNLTAQICAYERSLTTKEGNTEALIAQSHKHIKVKKKCGYCGIFGHKVRKCHKWISDGKPPKPPKPSTSQIRDTNMTIALMQVKTNEAVNIIEGDLENWYVDNGATSHVTGRNDIFSSFQYFNNNQTVTTANGSTTQAIGKGTVDLIAEVNGRQEKIRLCDVWYVPEIRRNLFSVLAAQDKLENSVFISERESCLLKVKDKIYLIGKRVKNGGLYKLNAQAIRNVTPELNTLSTENILQLYHERLAHQNKRHVKEIIEKEFGIKVKLDSELCTGCVYGKAHRRKFGTRERSKAPGEIIHTDVCGPFPNSFKKFHYFVLFKDDYSKYRQVYFIKHKYEVKEKLVQMIKETKNAGHEIKTILSDNGGEFNNEAVRKVLESNGILQRLTMPYTPEQNGCSERENRTLVEAARTMMYAHEELPLACWSELINTAAYILNRTGPTTVEGKSPFELWFGKKPEIKHLRVIGTECYAHIPKQRRTKLSKKTQKCILIGYDGDDGYRLLSYENGSATLIRSRDVTFNESIIRSIGLESDVDTTKEENSATDIEIHFPMTNDNHPVFDAREDVSRDEGIASMPQIPNDVPIPSSGEDIQSTSNDVNDIPNIEDEYYVTPEDSDNEQASSEETHNTRVLRDRSALRIPVRFEDYIMSAIVNEGEEPKTYKQALKSLHNAKWLEAMENEMKSLEENNTWILVDRPKDRKLISCKWLFKIKTNADGSLDKYKARLVARGYTQEEGVDYYDTFSPVARMTTIRSILSIAANEGLTLSQFDVVTAFLNGLLDEDIYMSQPEGFSDGTNKVCKLKRSLYGLKQSPRCWNKCIVDYLKTIEFKQCVTDPCLFIRNRRGNKIILALYVDDGLIASTNQKDAVELMAELKQKFKITTKPASHFLGLEIYKDNDGSISVSQKHYAQKILERFGMSDCKPVSTPIIKEEAQPDTKKDNDHKFPYREAVGALAYLMTGTRPDISYAISVVSRSLTNPSSQDIHKVKRILRYIKGTLDCTIVYKKGYKHGILECFSDSDHGGDKNTGRSTSGIICMYAGGVISWASRKQSSVAISSTEAELVAASEAAREIVWLKRLFNEVTKLNETPSLQIDNDAAIKLSQNPELHRRTKHIAIRHFYVRELVTNNELKRTDIDSIDINVVYQDHEYEVPLFSNHPTLDFESTLSDNKLTPLPPVTEITSGEQPQRIEGEKRYACTVCTKSFTRLYGLRYHMAKHTDTRKYLCSKCGKSFHTSNGLKQHSISHRDIAQFKCGFCHKTYKSRQSLKEHFRVAHSSNRMLFVCVTCGKRFTARSTLNMHVKTHNGEKFACSNCPKTYTRASYLKAHMLVHTGQQKPRPFSCSHQGCGRSFPTKHSLVVHIAHAHTTERSHKCDVCYKGFATASGLKIHLESHGNNMVSCNYCCKKLRTKRVLQKHMKTHDVDANDMILETVDQAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -