Dmen047864.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:6991373-6994191[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.028 3.9 9.7 5.5 1 23 10 32 10 32 0.99 2 14 0.19 26 7.1 0.1 2 23 58 80 57 80 0.92 3 14 0.92 1.3e+02 4.9 1.5 3 23 105 126 103 126 0.95 4 14 0.28 39 6.6 0.1 1 11 132 142 132 146 0.88 5 14 2.8 4e+02 3.4 3.5 1 23 186 209 186 209 0.93 6 14 0.025 3.5 9.9 2.1 2 23 235 257 234 257 0.95 7 14 0.02 2.8 10.2 3.1 2 23 280 302 279 302 0.94 8 14 0.0034 0.47 12.6 0.0 1 23 308 331 308 331 0.94 9 14 0.01 1.4 11.1 4.4 2 19 338 355 337 360 0.89 10 14 0.016 2.2 10.5 0.1 2 23 366 388 365 388 0.93 11 14 0.0014 0.2 13.8 1.5 1 23 395 418 395 418 0.95 12 14 0.00055 0.077 15.1 0.3 2 23 425 446 424 446 0.93 13 14 9.9e-05 0.014 17.4 3.3 1 23 452 474 452 474 0.98 14 14 8e-06 0.0011 20.9 0.6 1 23 480 502 480 503 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTCAAATGGTACCTTAATCGCTATCGGTGTTACTACTGCGACGAAACCTTTCTAGACTGCACAAAACTAAAAGAACACACTAAGAAACACGATGAAGTAAAAATAAGTAGGATTCTGAAAAGGATTGGGTGTCATAGTCGGATTAAATGGGATATTTCTGAGATTTCTTGCAAACTGTGTCCCAAACCAATAGTATCTATCGATCACTATTTAAATCATTTATCTGAAGCTCACGATTTAGATATTGATCGAGACGTGTTCCATAAATATTGCTACATCTTCAAATTATCAGACGAAGGCATGATTTGCCTCGAGTGCTGCGAAAGTTTCAAGTTCTTCGGTCCTCTACTGAGACATATCAACAAATTCCACAACAGCACAAAACAATACGTTTGCGACTACTGTGGTCTAGCTTTTGCGTTAAAAGTATCCGACGAAACTATAGAAGCTCGACACGCAGAAAGGCAAAGAAAATACGACCTAACAAAACTCATGACCATCATCATAGAAAACTCGTCAATTCTGCCGTTCAGGTGGTCTGCCAGCAAATACATGTGCTTCTACTGCTGTTGCGACTTCGTAGACAGCGCTAAGCTAAAAGAACATACAATAGAAGAACATAAAGGTGCCAAACTGAAGAATGTACTCAGAACGTTCATAGGGAGCAGTCGTGTCAAGCTTGATACCTCAGAAATCACCTGCAATAAATGCCATCACGAATTCCGTCTTCTCGACGAATTTCTGAACCATTTAGCGTCAGCTCACCAgtttaaaatcaacaaagaaatAGCTAAATGTATCTTTACCTTCAATCTTTCCGATGATGGAATGTCTTGTCACGACTGTGGACAGGAGTTTAGATTTTTCGGACCCTTATTGAAACATGTCCACAAATTTCACAACAAATACAAAACTTTTCTTTGCGAGATTTGTGGGCAAGGTTTTGTAGCTAAAGCGAATGTTTTGAGCCATATAAAAAACGTTCACACATTCACTCCTGGCTTAAATTGTCGGAGATGCGACAAGGTATTTAGAAACCACTATTCTTTGCAAACTCATTGTGAAAGCGTCCACAGAACGGAGATGCTTAAGTGTCCGAAATGTCCCGAGATGCTTGCTTCACAATACTTGAAGAAACGACACTTAGCGTTAGTCCACGATGTCAAAAAACTGCAATTCAACTGCGACCAATGCGAAAGAGTGTTTACAATGAAAAGCAGACTCGTACAGCATAAATTGAGGACTCATTTGAAGCAGAAGACAATATCCTGTGACGTCTGTGGTTTCAAAGTTTTTAGCAGCGATCTTTTGAAACGTCACATGGTGAGACATGATAATTCAAGACCTTTTGAGTGTAAGTTCTGCCAAAAGACATTTCAGAGGAAGAAAACTTTGGATGTTCACACACGTATACATACGAATGATAAGAGGTATGCTTGTAAAGAGTGTGGGAGGGCCTTCGTTCAGGTCACGAGCTGGAAGTTGCATATGAGGGTCCATCATGGGGGAACCGCTGGGGCGTCTTGGCATTGA
- Protein Sequence
- MPFKWYLNRYRCYYCDETFLDCTKLKEHTKKHDEVKISRILKRIGCHSRIKWDISEISCKLCPKPIVSIDHYLNHLSEAHDLDIDRDVFHKYCYIFKLSDEGMICLECCESFKFFGPLLRHINKFHNSTKQYVCDYCGLAFALKVSDETIEARHAERQRKYDLTKLMTIIIENSSILPFRWSASKYMCFYCCCDFVDSAKLKEHTIEEHKGAKLKNVLRTFIGSSRVKLDTSEITCNKCHHEFRLLDEFLNHLASAHQFKINKEIAKCIFTFNLSDDGMSCHDCGQEFRFFGPLLKHVHKFHNKYKTFLCEICGQGFVAKANVLSHIKNVHTFTPGLNCRRCDKVFRNHYSLQTHCESVHRTEMLKCPKCPEMLASQYLKKRHLALVHDVKKLQFNCDQCERVFTMKSRLVQHKLRTHLKQKTISCDVCGFKVFSSDLLKRHMVRHDNSRPFECKFCQKTFQRKKTLDVHTRIHTNDKRYACKECGRAFVQVTSWKLHMRVHHGGTAGASWH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00302442;
- 90% Identity
- -
- 80% Identity
- -