Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438910.1:13886365-13888290[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.032 4.5 9.5 0.2 2 23 312 334 311 334 0.93

2 9 0.0015 0.21 13.7 1.6 1 23 340 362 340 362 0.99

3 9 0.19 26 7.1 0.3 1 20 396 415 396 417 0.91

4 9 0.0015 0.2 13.8 0.9 2 23 431 452 430 452 0.97

5 9 0.0018 0.24 13.5 0.8 1 23 457 479 457 479 0.97

6 9 0.00019 0.026 16.6 1.5 1 23 485 507 485 507 0.97

7 9 4.8e-06 0.00067 21.6 2.0 1 23 513 535 513 535 0.98

8 9 1.3e-07 1.8e-05 26.5 2.0 1 23 541 563 541 563 0.98

9 9 1.4e-05 0.002 20.1 1.0 1 23 569 592 569 592 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.032	4.5	9.5	0.2	2	23	312	334	311	334	0.93
2	9	0.0015	0.21	13.7	1.6	1	23	340	362	340	362	0.99
3	9	0.19	26	7.1	0.3	1	20	396	415	396	417	0.91
4	9	0.0015	0.2	13.8	0.9	2	23	431	452	430	452	0.97
5	9	0.0018	0.24	13.5	0.8	1	23	457	479	457	479	0.97
6	9	0.00019	0.026	16.6	1.5	1	23	485	507	485	507	0.97
7	9	4.8e-06	0.00067	21.6	2.0	1	23	513	535	513	535	0.98
8	9	1.3e-07	1.8e-05	26.5	2.0	1	23	541	563	541	563	0.98
9	9	1.4e-05	0.002	20.1	1.0	1	23	569	592	569	592	0.97

Sequence Information

Coding Sequence: ATGAATAACACAAAAGATGCGATGTATTGTCGCCTTTGCGCGGTGTTAAAACAACATAAACAACTTCGAACACTGCATAGTGAGGATGAGTCGTGCCAGAGAGTCGTCGATCAACTGTTAAAATTCAATATAGTGCTTGATTTACAGGATAATATATTGCCGAAGACCGTCTGCTTACCATGTGTAAGATCTTTAGAAAAGGCCTTCAGGTTCATAACTGTAGTTGAAGAGGCGCAGGCATTCTTAAGCGACTTCATTCTTGTAAAAATTAATACTACTGTAACTCACTCTTGTGAGGAAAACATCTTCTATGAGAGCGAGACAAATGATATTAACGATATTGTCCACTTTAAAGATGAAAACTGTGAAGATTCTACGGAAGTAAATGACGGTGGTCCAAAGAACATTGATAGTGAATTCATGACTGAAGTGTATGATATTAATGATAAATCTGTGATAAACGGTAACACTGAAGAACATATAAAAATGGGGAATGAAGATGATAAACAACTTACAAATGAAGTTATTAAGCAAAATATTGATACAAATGTTGAATGTGATGAAAACCCTGATATAAACCATGTTGATGATATGGAAAACGTATTGAATGATAtaatagaaaaagaaaataataatttaaaatcaagACTCTTAGAAAATACAGCATGTTCAACAGAtgaagtaaataaaaacaatgataGCAAGATAGCTGAAGTTGCCAACAATATGGATACCACAATTCAACAACTACAACCAAAGCATAGCAACTCCAAAGAAAACACTCTCaaacaatcaaataaaaaatattccaaaacaaacaaaattgaaatacaaaaattTCAAGAAAATTACCAAAAAGATAGTAACTTGGCTGccaaaaatacatacacaaatGTAGAACATATTAAAACGTCATGGAAGGAATATGAATGGCAATGTTCTCGTTGTGAAACACTATTTGTCAGTGTTGACGACTTACAGAAACATGCAATGCAGTTCCACAACTCTTGTAATCTTTACAAATGTACTGACTGCGGAACAAAAAGATCAGATCTTAAAAGGTTTATGATACATGTTAGAACACACAGAACAGACTTAAATTACTCTTGCTATAAGTGCTTCGAAAAATTTCTTAGCACTAACAAAGTGTGTTCACACAGAAAGTGGGTTCACGAGAACTCCAAATATCTTTGCTTGGGATGCAGAATACCTTTCCATAATAACAGAGAATTAAAGGAACATGTTGACAAATACTTCAAAAAAAATTCATATTGCCTACCATCTGATTTGACATGCAGAATATGCAATATGACTTTAGCAAACAGTACAGAATGGCGTAGGCATCGGCGTAGCCACAAAAGCAAggagtttgtttgtgaaacctGCGGTTCAAGTTTCCTTACCAAATCAATGTTGAAAAGTCACTTGGTGAAGCATACTGTAAAGAAATTGTACAAGTGTGATATTTGTAAGGCTACCTTCAAAACTGTGCGTTATCTGCAAAAACACTCTAGCATTCACTCTGGAATAAAACCTTTTACCTGTGATGATTGTGGAAAAAGTTTCCATAACAAACAACAAATCGCTCAACATATGAAAATTCACATGAAATCACTCCCCTATACTTGTTCAGTCTGTGACAAAAAGTTTCGTACAAGCTCTAATGTTAAGGTTCATATGCGTCAGCATACTGGAGCAAAACCATTTCCTTGTGACATCTGTCAGAGAGACTTCACCGACCTGTCCAATCGCAACAAACATATGAGACTTAGACATGGTATTGAGATGGTGAAGAAGAGACAGCTAACACCAGATGAACCAACTACATTGGACAAAGTGAATGGATGCAAAAACACAATTAACGATCATGACAAGAGTGGAAAGgcgaacaataataataaaaaagtgaaaaacaagagGAATTAA
Protein Sequence: MNNTKDAMYCRLCAVLKQHKQLRTLHSEDESCQRVVDQLLKFNIVLDLQDNILPKTVCLPCVRSLEKAFRFITVVEEAQAFLSDFILVKINTTVTHSCEENIFYESETNDINDIVHFKDENCEDSTEVNDGGPKNIDSEFMTEVYDINDKSVINGNTEEHIKMGNEDDKQLTNEVIKQNIDTNVECDENPDINHVDDMENVLNDIIEKENNNLKSRLLENTACSTDEVNKNNDSKIAEVANNMDTTIQQLQPKHSNSKENTLKQSNKKYSKTNKIEIQKFQENYQKDSNLAAKNTYTNVEHIKTSWKEYEWQCSRCETLFVSVDDLQKHAMQFHNSCNLYKCTDCGTKRSDLKRFMIHVRTHRTDLNYSCYKCFEKFLSTNKVCSHRKWVHENSKYLCLGCRIPFHNNRELKEHVDKYFKKNSYCLPSDLTCRICNMTLANSTEWRRHRRSHKSKEFVCETCGSSFLTKSMLKSHLVKHTVKKLYKCDICKATFKTVRYLQKHSSIHSGIKPFTCDDCGKSFHNKQQIAQHMKIHMKSLPYTCSVCDKKFRTSSNVKVHMRQHTGAKPFPCDICQRDFTDLSNRNKHMRLRHGIEMVKKRQLTPDEPTTLDKVNGCKNTINDHDKSGKANNNNKKVKNKRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -