Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438916.1:2763324-2772113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.67 93 5.4 2.9 1 23 408 430 408 430 0.95

2 9 2.9e-06 0.00041 22.2 2.4 1 23 476 499 476 499 0.97

3 9 0.00056 0.079 15.1 0.3 2 23 505 526 505 526 0.97

4 9 6.9e-05 0.0097 17.9 3.5 1 23 534 556 534 556 0.97

5 9 9.5e-06 0.0013 20.6 0.8 1 23 561 583 561 583 0.96

6 9 4.8e-06 0.00066 21.6 1.5 1 23 592 614 592 614 0.99

7 9 6.1e-06 0.00085 21.2 0.8 1 23 620 643 620 643 0.97

8 9 0.033 4.6 9.5 0.5 1 14 649 662 649 672 0.82

9 9 1.4 1.9e+02 4.4 2.0 1 23 680 703 680 703 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.67	93	5.4	2.9	1	23	408	430	408	430	0.95
2	9	2.9e-06	0.00041	22.2	2.4	1	23	476	499	476	499	0.97
3	9	0.00056	0.079	15.1	0.3	2	23	505	526	505	526	0.97
4	9	6.9e-05	0.0097	17.9	3.5	1	23	534	556	534	556	0.97
5	9	9.5e-06	0.0013	20.6	0.8	1	23	561	583	561	583	0.96
6	9	4.8e-06	0.00066	21.6	1.5	1	23	592	614	592	614	0.99
7	9	6.1e-06	0.00085	21.2	0.8	1	23	620	643	620	643	0.97
8	9	0.033	4.6	9.5	0.5	1	14	649	662	649	672	0.82
9	9	1.4	1.9e+02	4.4	2.0	1	23	680	703	680	703	0.94

Sequence Information

Coding Sequence: ATGTTGCACAACACAGGGTCTTATGGTCCGAACGAGCCGCCTATAAACATGGGAGCGCCCGTTAATATGACACCAATAAGTGGTCACATGAATCTCGctcataacataaataatttgaGCAAAATAAGCCACCAAGGCGTCCCAGCGCCTAGCGGGCACTACAATATACCGGACTATGGACATTACAACCACTCTCCGTTATCGGTGGCTTCGCAAATGGGTCAATTTCCCAACTATCAACAACTGGGTTTTCAACAGTCATACATGAACCAAAATCCGAATAATATGAACGATTTATCATTCCCAAACGGTATGTTTCCTATGAATTTGAATATACAGAACGAACATGAGTCTAATATGATGAATTATGCTTACGATAAACGAGTTAATGAGTCAGCCAGACAAGAAAACTTAAAAGAACAAAATATACGTAAAATGCCGTTATACATACCTCAGATaccaaataaaatctataataaACACATTGGCGGCAACCACGACTATTTAGATAACAATATGTACCATGAAACACATCATAATCTAGATTTAAGCATGAAAACGCAAGAAAAGCTACAAATCAACAGTACAAGGCGGAAAAACATTGAACACACcgtaaaattaattgaaaatatccTTATCCAGTCATCAAATAAACCCAGAGAAGTACCAGTAATAACTCCAGTTGTACCGGACACTACTGGAACTGATGCACCATCGGATATGACAattgaaaagaagaagaagagcacGCCAAAACCGAAAAACATTCCTGTAATAGCTACAGACTTATTACCAGAATCTCCATCACCGTCGTCATCCATCTCATCCTTTTCAGACTTAAGAAAAGACAATACAAGTAAAGACAACGATAAACAAAATTCCGCCGAAAATGCAGCTAACGAAGAACAATATTTCGAAGAAAACGATAGTCAagacattaaaaataaatcagaaaCCGATATACCGTCAGACGATGAGGTAACGCCTATAGCAATAACCCAACACTTTATACGAGAAGATGCGGAAGTGACTACGGACAATACGATAGTCATAAAGGTAGAGAAAGCAAGTTGGACGGACTCGGACTGTTATATGCCGTTCTTGAAGGACAACCACGGGTTTGAGCGTGATGAACACATAAACTATAGGATCATTGAGGGTGATTGTAGTATTGAGCAAGCTATTACTTGCTATAAACATGGCATAAAAGCAGAAGGAGTATTCGAATGTCCCCACTGCGCTCTCCTCTTCAAGCATCCAAAAAGGTTTCTCATCCACAACAAATGGCACACATTCGGCCTCACAAATATTAAACGTATAGAGTATGCTAAAGCTAAGCTACAAAAGAGGTCGGAAAGAAAAGAGGCTAAGATAGTGGAACGGATGAAGTCTAAGGAGGTGACGATGAAGACGGATGCAACGGTGTTTCCTTGTAAGGATTGTGATAAGGTGTTCCATACTAAGGGGAGCTTGAAGAATCATAGGCAGAGAGCCCACCCAAGCCGCGCCCGTGAATGTAGGATCTGCCACAAGCCTATATCAAGCTGGACAGCCCTCCGAGCGCACTTGGCGACCCACTCCGCGGAGTCAGGACTTGGATACCAGTGTAGTCTATGTCCCAAGAGATTCAAGTACTCTCACTCACTGGCTAAACACTCTGATACTCATTTGGAGAAAACCCACGCGTGCGCCGACTGCCCCAAGAAGTTCGGTTCCCAAGCCCTGCTCAAGATGCATATGAAGACCCACGAGCGGGTGCTACGTGGAGCCACATTTAGGTGTACCTACTGCGGGAAAGGATTCTTTGAGTCTTATAGTTTACAGGTTCACGAACGGACACATCGTAACGAGAAACCGTTCACGTGTGATATCTGTAACACCAGCTACGGAACCAACTCTAGTCTTAAGAGACACGTCAAAGTGTCCCACAACACGGCGAAGCCCTATCAGTGTAGTATATGCAAGCGGAACTTCTCCACGGAGTCCATCAGAGACAAACATGAGCTCAGGCTACACGGCAAGCCTGAAGACTTCAAGTTTCCCTGCAAGCAGTGTTCTAGCAAGTATTTAAAACTAAAAGATCTTCAGAAGCACATCTACAAAATGCATCCTAAAGCTAAAAGGAAGGAAAAAGAAGTGGAGGAAGAAGCAGCGAGCGAATCAGAATAG
Protein Sequence: MLHNTGSYGPNEPPINMGAPVNMTPISGHMNLAHNINNLSKISHQGVPAPSGHYNIPDYGHYNHSPLSVASQMGQFPNYQQLGFQQSYMNQNPNNMNDLSFPNGMFPMNLNIQNEHESNMMNYAYDKRVNESARQENLKEQNIRKMPLYIPQIPNKIYNKHIGGNHDYLDNNMYHETHHNLDLSMKTQEKLQINSTRRKNIEHTVKLIENILIQSSNKPREVPVITPVVPDTTGTDAPSDMTIEKKKKSTPKPKNIPVIATDLLPESPSPSSSISSFSDLRKDNTSKDNDKQNSAENAANEEQYFEENDSQDIKNKSETDIPSDDEVTPIAITQHFIREDAEVTTDNTIVIKVEKASWTDSDCYMPFLKDNHGFERDEHINYRIIEGDCSIEQAITCYKHGIKAEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRIEYAKAKLQKRSERKEAKIVERMKSKEVTMKTDATVFPCKDCDKVFHTKGSLKNHRQRAHPSRARECRICHKPISSWTALRAHLATHSAESGLGYQCSLCPKRFKYSHSLAKHSDTHLEKTHACADCPKKFGSQALLKMHMKTHERVLRGATFRCTYCGKGFFESYSLQVHERTHRNEKPFTCDICNTSYGTNSSLKRHVKVSHNTAKPYQCSICKRNFSTESIRDKHELRLHGKPEDFKFPCKQCSSKYLKLKDLQKHIYKMHPKAKRKEKEVEEEAASESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00302464;
90% Identity: iTF_00446500;
80% Identity: -