Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438899.1:19537667-19550607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.1 1.5e+02 4.7 0.1 3 23 111 131 109 131 0.96

2 17 0.055 7.7 8.8 0.2 2 23 135 157 134 157 0.95

3 17 2 2.8e+02 3.9 3.9 2 23 208 230 207 231 0.91

4 17 0.0033 0.47 12.6 0.3 2 23 389 411 388 411 0.95

5 17 0.0036 0.5 12.5 0.1 1 20 419 438 419 440 0.94

6 17 0.0023 0.32 13.1 0.6 2 23 450 471 449 471 0.94

7 17 0.0018 0.25 13.5 3.6 1 23 519 542 519 542 0.98

8 17 1.2 1.7e+02 4.6 0.3 3 15 621 633 620 642 0.79

9 17 1.7e-05 0.0024 19.8 0.9 1 23 676 698 676 698 0.96

10 17 6.2e-05 0.0086 18.1 1.8 1 23 705 727 705 727 0.98

11 17 0.00011 0.015 17.3 2.3 1 23 732 754 732 754 0.96

12 17 0.00046 0.065 15.3 1.4 1 23 760 782 760 782 0.98

13 17 2.2e-06 0.00031 22.6 1.3 3 23 790 810 788 810 0.97

14 17 0.0007 0.098 14.8 2.6 2 23 817 838 817 838 0.98

15 17 0.0011 0.15 14.2 0.7 2 23 846 868 845 868 0.97

16 17 3.6e-05 0.0051 18.8 0.6 1 23 873 895 873 895 0.97

17 17 0.0027 0.38 12.9 1.9 2 23 902 924 901 924 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.1	1.5e+02	4.7	0.1	3	23	111	131	109	131	0.96
2	17	0.055	7.7	8.8	0.2	2	23	135	157	134	157	0.95
3	17	2	2.8e+02	3.9	3.9	2	23	208	230	207	231	0.91
4	17	0.0033	0.47	12.6	0.3	2	23	389	411	388	411	0.95
5	17	0.0036	0.5	12.5	0.1	1	20	419	438	419	440	0.94
6	17	0.0023	0.32	13.1	0.6	2	23	450	471	449	471	0.94
7	17	0.0018	0.25	13.5	3.6	1	23	519	542	519	542	0.98
8	17	1.2	1.7e+02	4.6	0.3	3	15	621	633	620	642	0.79
9	17	1.7e-05	0.0024	19.8	0.9	1	23	676	698	676	698	0.96
10	17	6.2e-05	0.0086	18.1	1.8	1	23	705	727	705	727	0.98
11	17	0.00011	0.015	17.3	2.3	1	23	732	754	732	754	0.96
12	17	0.00046	0.065	15.3	1.4	1	23	760	782	760	782	0.98
13	17	2.2e-06	0.00031	22.6	1.3	3	23	790	810	788	810	0.97
14	17	0.0007	0.098	14.8	2.6	2	23	817	838	817	838	0.98
15	17	0.0011	0.15	14.2	0.7	2	23	846	868	845	868	0.97
16	17	3.6e-05	0.0051	18.8	0.6	1	23	873	895	873	895	0.97
17	17	0.0027	0.38	12.9	1.9	2	23	902	924	901	924	0.96

Sequence Information

Coding Sequence: ATGTCTTCGGATGAGTCTGATGATGAACCGCTATCAGTTATAGCGGCGAACAAAAAATTAGTCCCAGAACAAGAGGAAGTCTCATCAGATTCTTTGGAGTCTCCcaataagaagaaaaagaagttACCACCACCTAAACGTTTCTCAGCCACGATACGGCTCCCAAGTAGGAGGACTGGTCGTGAACTAGTAGAGCGGCCCACAGATGTGTGGCTCTACCTAAAAGATCTCAATCCTTCAGGTCCTTACAGCTGCTTACTTTGCACGGATTGGTTCATAAACAGAGCGAAAATGGTTATGCATTACGTTCTAAATCATAAAAAAGATTTCTGTGGTATCTGTAGATACTTTGTACCTGATAGAGAAGCATGGTTGAAACATTTGAAGTTTCACACTCCCTGGCCATGCTCTCAATGCGTTGAGAACTTTGAAACTGAAACAGACCTCCGGCTCCATTTCAAGTCTGAGCATAATCTTGTGCATTGTCGACTGTGTCATTTCCGTGTACTCGATGGTGACTTGTATCATGCACATTTGTTCAAAAAACACACTGTCTCCAATGTGGCTAATAAAGATGAAGAAAATCTTTGGGAGTTAGAATACGATGGCACCTCAAATTTTCTCTGTTTACTTTGTAATAAATCTACCAACTCAACTAGAACATTCTTCAACCATTATATGGGGTATCACCATTTTACCATAAAATGTTTCACAGCTCTGTTGTCAGGAAGAGAAATACCATTCTTAGTGTATGGTGCTGATCTCAGAGCAGAATTTGTTGAAGAACAACTGAAACAGCATGAGAGATATGGCTATGCTGACACTGAGCTCAACCCTCCTGACTCAGCTTTAGAGGCTGGCACAAATGTAACTAGAGAATTAATCAATGAAATATATCTACCAGAAATTAAACAGGAAGTGGAGGCAGCTGAAGATTCCCAAAATGATGATGGAACTGAAAAGACCAAAGATGACCAAAATGATGTTTACAAAAGCTACAAtggtattgatgattttgatgttaCATTAACGGAACTGATAGTAGTACAGAAATGTTACCAAGATTACATTAGTGACATACTGTCGGATATTAATGCTAAAtcattttttgaatattcaGAAGTTGATTACGATAAGCTTTCAACTAAAGTACCTATGGATATAGTTTGCACATTGTGCAGTGTTCGATATAGCACTTTGGCAAATTTTACCGCTCATATGTTCAAGATGCATTGTATAAAGTCTTTGCCAATATATTCCTGTAGAATTTGTTCCACTCCCTTTGAGACCCAACAAGACCTTGAAAATCATACAGCAAGAGAGTTAGGGGAATTTGAGGATCTGTGGATATGCCAGTTCTGTGATAAAGAATTTGACGACAGGGAGAACACGCGGCGACATCTGACTGAACATTGGAATGATGTGGAGTATGACAACTGTTTCAGTCCACATTTGGGTTTCAAATGTCGGTATTGCCCGACTCTGTTTTGGCACGAAACGGACAGAGAGACGCATCAAGTGCGCGCGCATTATTTCAACCATAAAGACGCGTATTACAAGTGTGAGACCTGCAATGAAACATTTAGTGATGAGGTCTGGTTTGTCCACCACCATTTAACCAAACACAATACTCCTGACAAGACACCGCTGTACCTCCTAAAGTGTTCCATATGTTGTGTGGTGCTGCCAAGCATCGAGGAGATGAGAGCACACTTCAATTGTGACCACGGTGAAGCTAGGAAGGTGTTCTGTTCGTTGGACTCCTGCAAGTACAAGCCTTTGAGCCATCGGAAGTCTTTTAAGCTGCATTTGCGGTCGATGCATTCCTCCCGCTCGACTCGTGCGGACCGGGCAGTGGATTGCGTGATCTGTGGCCGCGAGTTCAGCAGCGCGCGGGCGTGTGGCGCGCACACTGCGCAGGCGCACGGACCCGGCAAGTTCAAGTGCAAACTGTGCAGGGAGATACTGCACACTGTGGATGAAAGAAAACTCCACTACCTAATAAGTCACCCGGGGCAGCATCCGTTCGCGTGTCCGGACTGTGGCAAATCGTTCCAGTACAAGTCTTCACTGTACATGCACAAACAGGAACATCTGCCTAACAAGCAGAACTATACGTGTACTTACTGTGGGAAGCAGTTCATGAAACGCGATTCATTTCGTGAACACGTCCAAATCCATGAGGGACCACGTCACGCGTGTTCGTACTGCCCGATGCGCTTCGTGCAGCGATCTAACATGCTACGTCATGAGAGACGACATACTGGCGAGAGACCTTACGCCTGCCCGCACTGCCCACGAACCTTCGCTGACAAGGGAGCCTGTAATTCACACGCCAGGACCCATCTAAAGAGTACGTCTTACGGGTGTATGTACTGCGGCAAGACTTTTGTGCAGAAGTCCAAGCTTACGTATCACATCAGGAAACATACTGGCGAAAACCTGGAGACGTGCACAGTATGTTCGAAGTTGTTCACAAGCGCGTGTTCGCTGCGGGAACATATGAAGATACATGAACCTAAGAAAGCTCAAGTGAAGTGTCCGCTATGTGACCGCAAATACCAAGACGAGCGCTACATGCTGCGTCACCTGCGTACCTCCCACACGACGGCACAGCATCCCTGCCCCATCTGCAACAAGATGCTCACCAGCCCTGCAGGGCTCCGCCACCACGTCATGACGCACAGCTCTAAGAAGACCATCAGGTGCAAAATGTGTCCAAAAGCGTACTCCGTGAAGAAATCAATGCTCAAACATTTCCGTCGTCGGCACGGTTTCAAGGGTAATGAAGCAAACATCAAAGACTTCTACACTAGGCTGGACCCTAGAGAGTGCAACCTAGGCCTCGACGAGCCTATCCTGATCAGTATATTCGGACCTCCAGCCAAGAAACCCATGGACGACCTATTATTATCAGATTACGTCACACTTAAAGACCTGAAAaaaccgagaaaaaaaaaagaaaaaaaacagaaagagACAGAAAATTCACAAGATACACTATCAAGTGACTCTCAGTCAGAAATTCCCGTAGTGCAAGACAAGGATGGAGATAGTAATGTAACAGGTGAAAGGCGTATAGTTATAAAGATTGAGCCTGAGGAACCGAGTGAACACACAGTTGTGGAGCTGGAACCCACTGATTTTGTTAGCGTTAAAATTGAGCCAATGGATGATGAACGTGATGAATAA
Protein Sequence: MSSDESDDEPLSVIAANKKLVPEQEEVSSDSLESPNKKKKKLPPPKRFSATIRLPSRRTGRELVERPTDVWLYLKDLNPSGPYSCLLCTDWFINRAKMVMHYVLNHKKDFCGICRYFVPDREAWLKHLKFHTPWPCSQCVENFETETDLRLHFKSEHNLVHCRLCHFRVLDGDLYHAHLFKKHTVSNVANKDEENLWELEYDGTSNFLCLLCNKSTNSTRTFFNHYMGYHHFTIKCFTALLSGREIPFLVYGADLRAEFVEEQLKQHERYGYADTELNPPDSALEAGTNVTRELINEIYLPEIKQEVEAAEDSQNDDGTEKTKDDQNDVYKSYNGIDDFDVTLTELIVVQKCYQDYISDILSDINAKSFFEYSEVDYDKLSTKVPMDIVCTLCSVRYSTLANFTAHMFKMHCIKSLPIYSCRICSTPFETQQDLENHTARELGEFEDLWICQFCDKEFDDRENTRRHLTEHWNDVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHYFNHKDAYYKCETCNETFSDEVWFVHHHLTKHNTPDKTPLYLLKCSICCVVLPSIEEMRAHFNCDHGEARKVFCSLDSCKYKPLSHRKSFKLHLRSMHSSRSTRADRAVDCVICGREFSSARACGAHTAQAHGPGKFKCKLCREILHTVDERKLHYLISHPGQHPFACPDCGKSFQYKSSLYMHKQEHLPNKQNYTCTYCGKQFMKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHARTHLKSTSYGCMYCGKTFVQKSKLTYHIRKHTGENLETCTVCSKLFTSACSLREHMKIHEPKKAQVKCPLCDRKYQDERYMLRHLRTSHTTAQHPCPICNKMLTSPAGLRHHVMTHSSKKTIRCKMCPKAYSVKKSMLKHFRRRHGFKGNEANIKDFYTRLDPRECNLGLDEPILISIFGPPAKKPMDDLLLSDYVTLKDLKKPRKKKEKKQKETENSQDTLSSDSQSEIPVVQDKDGDSNVTGERRIVIKIEPEEPSEHTVVELEPTDFVSVKIEPMDDERDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: iTF_00446441; iTF_00445457;
80% Identity: -