Dmen050425.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_949316265.1
- Location
- OX438916.1:11042100-11055462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.9e-06 0.00096 21.1 1.5 1 23 898 920 898 920 0.98 2 10 0.26 36 6.7 0.7 2 23 925 947 924 947 0.92 3 10 3e-06 0.00041 22.2 5.1 1 23 955 977 955 977 0.97 4 10 0.00021 0.029 16.4 4.3 1 21 983 1003 983 1004 0.95 5 10 2.4e-05 0.0034 19.4 0.3 2 23 1016 1037 1015 1037 0.96 6 10 0.00055 0.077 15.1 5.5 1 23 1043 1065 1043 1065 0.96 7 10 1.1e-06 0.00016 23.5 0.5 1 23 1071 1093 1071 1093 0.98 8 10 3.6e-06 0.0005 22.0 2.9 1 23 1099 1121 1099 1121 0.97 9 10 3.4e-05 0.0047 18.9 2.1 2 23 1128 1149 1127 1149 0.97 10 10 0.0002 0.028 16.5 3.7 1 23 1155 1178 1155 1178 0.96
Sequence Information
- Coding Sequence
- ATGTACATGGACGACATTCTAAGGTTAAATATGGCACAGGCGGAGTTGATCTGCTATGCTGATGACACCGCTATAATTTTTCACGGTTCTACTTGGGAAGAGACAATGGATGCTGCTGAAAAGGGAATGAGTAAAATAATGGCATGGCTAGAACAAAATCTCTTAACTCTGAATGTAAATAAAACGCACCTATTAACTTTTCATGTCACTCAATCAAGTAGGCCAAATATTGACTCACTTAAAGTACACAATAACAAATGCGGTGTCTCAGCGGCAGCATCCGTGTCCGCCACAGACTGTAACTGCAACACCATCAACAGAGTAGAAACAACGAAATATCTTGGCGTCATAATTGATCAGAACCTGAACTTTAAAGCACACATTCGAACACTTGCCAAAAAGACTCGAAAATTCATTTATATCGCTAAACTATTAAGAGCTAGCGCTCCAAAAAACATCCGCATTCTGGTCTACACTTCACTGTGCCAGTCTGTCCTGCAATACTGTGTCGGTGTCTGGGGTAGTGCTGAAAAAGCGTGCATGCTGGAGCTGGAGCGCGCGCAGAGGGCCGTGCTTAAAGTGCTTTTGGGAAGGCCGCGTCGTTTTTCTACGGACGAACTGTATAAGGAGGCTGGGGTCTTACGCGTACGTCAACTGTATGTCCTTGGGTCACTTTTAAACCTCATAAAACTCAACAAAAATCGCTCTAGTTGTAGTAAAAGAGGCAGGAAGATCGCGGAAAGAATACCACTCCCTAAAATCAAAACCCTCTTCGCAGCCCGATTTTCGCCATACTTACCTATAAGAGTATTCAACGCTATTAGCAAAACATTCTGCATACCCAATAACTACTCTGAGGCGAAAAACAAACTCAAAGAATGGTTGCTAGACCGGACATATGAGGAAACAGAGAACTTACTTTactGTAACGCCGAATTGCTAAATATTGGGACATCGCCCCTAGAATCAGTAAATTTCGTCAATAATCACTTTGCCAACGTTGGTAAACTGTTAGCTCAGCAAATAGTGCCAAGTACAAATAATATACAAGCTGTCAACCAACCTGCACAGAGTAATACTTTTGTACTCTTAGACACTGATCCTCATGAAGTACACCAAATACTAATGGGCTTAAAATCAGACAGTGCCCCGGGATGGGACAAGATCTCGACAAAATTCCTAAAGTTTGCTCGTTTTGATATCGTTCCCATAATAACCCATCTTGCAAACCTTTGCTTTCAAAAAGGCATTTTCCCTGAGCTGCTCAAGCAATCAATCATTACTCCAGTACATAAGGGGGGGGACAGAGACGATGTCAATAACTACAGACCTATCTCTATCCTTCCGTCGATATCCAAAATACTTGAAAAACTTCTGAATGTTAGATTAACTCAGTACTTAAATAAATTCAGTTTACTATCGAAACAACAGTTTGGCTTCAGGCAAGGATTATCGACGGAGGATGCGGTTTCAGCTCTAAGTTCCCTGGTAACTGAACATCTTGATGCTGGGAGTAAATGCTTAGCGGTCTTCCTAGACCTTaaaaaagcatttgacaccGTCTCTGTCCCAAAccttgtgaacaaactcgaaaATGCTGGAGTGAGAGATATTCCTCTGAAATTATTCAAGGACTACCTCTCAAGAAGAGGGCAGAGGGTCAAGATGGAAGAATATGTCAGTGAACATACGGAGGTGACATATGGTGTCCCACAGGGTAGCATACTGGGCCCTACCCTCTTTCTTTTGTATATTAATGACCTATGCAACATGAACATCGAAAATGCAAAAGTCTTCTCGTACGCTGATGACACCTCTGTCGTTTTCACTGGGAACTCATGGCACGACGTAAAACTAAAAACAGAAATGGGCATGGCTCAAGTTGCCAgctggctaaataataacctGCTCACGCTGAACACATCCAAGACTAATTACGTATGCTTTAGCGTTAGTAACAGGACACAACCAAGTGAcgattttaacataaaaatacatGTCTGCGGAGATCCAACAAATAGCCGGTGTGACTGTCTAGGTATTTCCAAAATTTCGCAGACCAAGTACCTGGGAGTTGACCAACGTCTATATTGGTACCAGCATTTAGAACAGGTTACAAATAGAGTTAGGAGATTGAGCTGGATTTTTAAATCACTACGTCACATTGCTCCAAAAGTAATAGTCGGTAAACGTGAGTGTACTAGAAACATCCTGAATGAGGTGTACTTGGCTCTGGTTCAATCGGTTTTACTGTACTGTATCACGGTTTGGGGAGGCGCAACTAAAACCAAACTCATATACTTAGAGCGAGCCCAGCGTGCTCTTATTAAGATTATCACCAAGATTAAATTAGAAGACGATTCACCAGACAACTCGCATTTAGCGAACAGCAAACAGTTACCGGACAGCTCGCAGTTACCGGACAGCAAGCCGTTACCGGACAGTTCGCAGTTACCGGACAGCAAGCAGTTACCGGACAGCTCGCAGACCGACAACAACACCTGGCTTGTTGCTATCAAGGAGGAAATTGAAGAGGTTCACCCTGAAACTTTCTTGCAGATCGATATCGAGATAGATCAGGAATCAGAGAACGATGAGGCAGCTTTAGGGAGCCATTCATCTGATGACTCGGAAATTCAACCAGCTCCTTACGATGATGGTGATTATGATCCCGACAGCAAACCAGGAAGTTTCCGCTGCACAATTTGCAAAATATCTTACTCCACTGCGTTCAACCTACAACGTCACTTACTTCGACATCAAAACGCTTTGAAATGCCAACAATGCGACAGTCTGTTTTACACTCAAGCACGCTTGAACAGTCATATTGTCAACCGACACACCAACCCGGGCGATAGGCTACATTCCTGCGATGTATGCCAGAAAACTTTTAAGACCTCTTCAAACTTACAACAGCATAAAAAAACCCATTTAGTCGACAAACCTTTTCAGTGCACCAAATGTTCTCAAACGTTCTCTTTTAAGAGCAACTTTCAGAAACATCAAACGAAACCCTGCCCCGTGATAACTACAAAAGAACCTTTAATTTGTGGAATCTGCGATAAGGTCTTTGAAAAGGAGTATTTATTGAAATCTCATTTGCGTAAACACGACACTGACAGACCTTATTCCTGTGAAGAGTGTACTATGACGTTTAAGCATAAAAGCACGCTTATGCGTCATTCCCACGTCCATAGCGGGGTTAGACCATACCCTTGTCCACACTGTGGGAAGACTTTCACGAGTTCTGGTCTCCTAAAACCCCATTTAAGAGTCCACACCGGTgagaaaccttacaagtgtgaggTTTGCCCGAAAATGTTTGCCCACAAACACAATATGCAAAGGCATATGATAGGACACAGGAAAATTAAGCACACAGTTTGTGATATATGCCATAAAGAGTTCCCCCGAGAAAGCAGGCTGAGATATCACATGAAGACACATATAAATGAGAAATTTTTCATATGTAAAGTTTGTCCGAAACGGTTTTCTCATAAACAGAATGTTATAAGGCATTATTCTAGAAAACATCCGGGTAAAACTTATAGTTGTGAAGAAACGGACGCTTCTGTCGCGGCTAAAGTTTGGGATACAGTGAAAAAAAGATTTGACGAAGACGACGAACCAGAGGAAATTCTTGGTTGA
- Protein Sequence
- MYMDDILRLNMAQAELICYADDTAIIFHGSTWEETMDAAEKGMSKIMAWLEQNLLTLNVNKTHLLTFHVTQSSRPNIDSLKVHNNKCGVSAAASVSATDCNCNTINRVETTKYLGVIIDQNLNFKAHIRTLAKKTRKFIYIAKLLRASAPKNIRILVYTSLCQSVLQYCVGVWGSAEKACMLELERAQRAVLKVLLGRPRRFSTDELYKEAGVLRVRQLYVLGSLLNLIKLNKNRSSCSKRGRKIAERIPLPKIKTLFAARFSPYLPIRVFNAISKTFCIPNNYSEAKNKLKEWLLDRTYEETENLLYCNAELLNIGTSPLESVNFVNNHFANVGKLLAQQIVPSTNNIQAVNQPAQSNTFVLLDTDPHEVHQILMGLKSDSAPGWDKISTKFLKFARFDIVPIITHLANLCFQKGIFPELLKQSIITPVHKGGDRDDVNNYRPISILPSISKILEKLLNVRLTQYLNKFSLLSKQQFGFRQGLSTEDAVSALSSLVTEHLDAGSKCLAVFLDLKKAFDTVSVPNLVNKLENAGVRDIPLKLFKDYLSRRGQRVKMEEYVSEHTEVTYGVPQGSILGPTLFLLYINDLCNMNIENAKVFSYADDTSVVFTGNSWHDVKLKTEMGMAQVASWLNNNLLTLNTSKTNYVCFSVSNRTQPSDDFNIKIHVCGDPTNSRCDCLGISKISQTKYLGVDQRLYWYQHLEQVTNRVRRLSWIFKSLRHIAPKVIVGKRECTRNILNEVYLALVQSVLLYCITVWGGATKTKLIYLERAQRALIKIITKIKLEDDSPDNSHLANSKQLPDSSQLPDSKPLPDSSQLPDSKQLPDSSQTDNNTWLVAIKEEIEEVHPETFLQIDIEIDQESENDEAALGSHSSDDSEIQPAPYDDGDYDPDSKPGSFRCTICKISYSTAFNLQRHLLRHQNALKCQQCDSLFYTQARLNSHIVNRHTNPGDRLHSCDVCQKTFKTSSNLQQHKKTHLVDKPFQCTKCSQTFSFKSNFQKHQTKPCPVITTKEPLICGICDKVFEKEYLLKSHLRKHDTDRPYSCEECTMTFKHKSTLMRHSHVHSGVRPYPCPHCGKTFTSSGLLKPHLRVHTGEKPYKCEVCPKMFAHKHNMQRHMIGHRKIKHTVCDICHKEFPRESRLRYHMKTHINEKFFICKVCPKRFSHKQNVIRHYSRKHPGKTYSCEETDASVAAKVWDTVKKRFDEDDEPEEILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -