Dmen047977.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:8077561-8085131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.042 5.8 9.2 0.6 1 23 86 109 86 109 0.93 2 18 1.6 2.2e+02 4.2 0.3 2 23 135 157 134 157 0.94 3 18 0.087 12 8.2 2.7 2 23 180 201 179 201 0.95 4 18 0.00015 0.02 16.9 3.4 1 23 205 227 205 227 0.97 5 18 0.0012 0.17 14.0 0.4 1 23 232 255 232 255 0.97 6 18 0.069 9.7 8.5 0.2 2 23 263 285 263 285 0.88 7 18 2.6e-06 0.00036 22.4 0.8 1 23 292 315 292 315 0.96 8 18 4.2e-05 0.0058 18.6 2.9 1 23 321 343 321 343 0.94 9 18 1.7e-06 0.00023 23.0 0.9 1 23 349 371 349 371 0.98 10 18 0.029 4.1 9.7 0.5 1 19 377 395 377 398 0.85 11 18 0.057 8 8.7 0.4 1 23 436 462 436 462 0.88 12 18 0.54 75 5.7 0.3 2 23 531 552 530 552 0.96 13 18 0.055 7.6 8.8 0.5 1 23 556 578 556 578 0.98 14 18 0.13 18 7.6 1.2 1 22 583 604 583 606 0.82 15 18 0.26 36 6.7 3.7 1 23 612 635 612 635 0.89 16 18 0.0011 0.16 14.1 1.4 2 23 643 665 642 665 0.96 17 18 9.9e-06 0.0014 20.6 0.9 1 23 671 693 671 693 0.98 18 18 0.00054 0.075 15.1 2.7 1 23 699 721 699 721 0.98
Sequence Information
- Coding Sequence
- ATGTCAACAGAGCGGGAGTGCTATAGAGATGCCCAACGGAATATTGAGGCTACAGAGAATGAAAAAGCCAAAGAGGAAAGCAACGTACCGACTCCCAAAGAACCGAAGACCAAATGCACGACAGCGGCTGAAGATGGTATAGATATGAGCCGCTTACAGAAAGGAAAAGATCTTGTGGCAAATTTCAAAGCTACCGTTCGTTCTATACTAAAATTCACGAACGCCACACCAATCCGAGGTTACTGGGGAATCGGATATGCATGCACGTACTGCGCTTACCAAACCGGCCAAACTTCTGAGCTAAAACGACACACATTAGAGACACACTCCAAAAATGACAACGAACTTGAGAACTTGAAATATGTCGCAGATATGATCATTAGGCTCGATATAACAGCCCTCAAATGCCGGATATGCAACAGTAAACTAAATTCTCTTTACGGAATTATGAATCATATTAAACTAATTCACAAAGCACCTATGTATTTAGACATCTCGAATCATATAGTTCCTTTCAAGTTCGGGAAGGACGATTTAACTTGCGCTCTCTGCCCCTCACAGTTTAATCATTACAAGCATTTATCCGAGCACATGTCTGAGCATTTCCCAAACTATGCGTGCAAACAATGCAATAGATGCTTTATTAACCAACGTGCTCTAAGAATGCACACATTGAGACATTTAACAGGGACTTTCGTTTGCTCCTTTTGCCCCAAAATCTTTGACACCCAAATCAAAATGAGAGAACATGAAAGAGTTTTACACCTTAAAAGTTCCAAGGTCCGTAAATGTGGGTACTGTGACGAAAGATTCGTGGATCCTGTATTAAAAGCTAAACATGAAGTCAAAAAACACGGTGCTCCCACAAGCAAATACGTTTGTAAGGAATGCGGGAAGAGTTTCAAAAGTCAACGAGCTGTCAAAGCCCATTTGAATCAATTTCACTTGAAGTTAAGACCGCATGAATGCTCAGAATGCGGAAAAGGGTTTTATAATAAACAGCAGTTGAAACGACACAGTGTAAAGCATACGAAAGCCAAGGAGTTTCAATGTGATATCTGTTCGAAATTCTATGCCTCGAAGTCTTCGCTAAAGGCTCATCTGAAAATACATGAGAATGAGAAGAGTTACTCTTGCGAGAGCTGTGGAAAAACGTTTATACAGAAAATTGTTTGGGTACATCATGTGACGCATCAGGAATCCGAACCAGACTCCAGCCGCGAGAAGATGTACCAATTTCTAAAAGAAATCAAAGCCATCCTAACATTCACAAACGCTACCCCATACAAATCCAAAAACGTCAAGTACTACTGCGCTTACTGTTCCACCGACGGACCTCACTTCGAAGACCCGGACGACCTCCGGACACATACGCGGACAGAACACCGGACAGAGAAGATAGAATTCGCCATGCGTCCGTATTGGATGAACGAAATAATCAAACTTGATATAAAAAACCTTCTATGTACTGTCTGTTGCGTTGTCATCAATAATTGGAATGAAATGTTCAAACatttaaaggaaaaacataGTGTAGTCCTAGATCAAGCTTACACGAGAGCTATTCCTTATATTTTAACGACGGATTTGCAATGCGCGTTGTGCAAAGAAGCTTCCTCCAACTACCTACATTTAGATGGGCATATGAATGCTCACTACAACAATTATGTGTGCTATGATTGTGGGGACTCCTTTCTCTCGAGCAATCGACTAAAACAACACGTTAAAATACACAACATTGGCAAATTCGACTGCAGTTTTTGCGACAAAGTTTTCACCCTAGACAAATATAGGAGAAAACACGAAGAATTGGTCCACGAACAAATTTCTAAGTTCAAATGCCTTTACTGCGAAGAGAAATTCACTACGGAGTACTTAAGGCACCAACATTATGTAAACAACCACCCCGAGAAAGTCAAAAGTATAACTTGCGAATTTTGCGGAGAATCGTTTACTTGGAAGCAGTACTATACGAGCCATATGCGCAAGAAGCATCAGAATAAAAAACCTTACGAATGTCCGAAGTGTGAGAAGAAATTTTACGCAAATTATGAGCTTAAAGAGCATATGCTAAGACATGCGGGGTTCAAGAATTTTGAATGCCTTCTTTGTCATAAGAAGTATGTGTCTATGAATTCTTTGAAGGCACATATGAAACAGCATATAAAGAAtcctggccaaCCCAActttacccactgctgggtagaGCCCATAGATTTAAATCACAAATATGCCCTCACCGTAGTACTGTAG
- Protein Sequence
- MSTERECYRDAQRNIEATENEKAKEESNVPTPKEPKTKCTTAAEDGIDMSRLQKGKDLVANFKATVRSILKFTNATPIRGYWGIGYACTYCAYQTGQTSELKRHTLETHSKNDNELENLKYVADMIIRLDITALKCRICNSKLNSLYGIMNHIKLIHKAPMYLDISNHIVPFKFGKDDLTCALCPSQFNHYKHLSEHMSEHFPNYACKQCNRCFINQRALRMHTLRHLTGTFVCSFCPKIFDTQIKMREHERVLHLKSSKVRKCGYCDERFVDPVLKAKHEVKKHGAPTSKYVCKECGKSFKSQRAVKAHLNQFHLKLRPHECSECGKGFYNKQQLKRHSVKHTKAKEFQCDICSKFYASKSSLKAHLKIHENEKSYSCESCGKTFIQKIVWVHHVTHQESEPDSSREKMYQFLKEIKAILTFTNATPYKSKNVKYYCAYCSTDGPHFEDPDDLRTHTRTEHRTEKIEFAMRPYWMNEIIKLDIKNLLCTVCCVVINNWNEMFKHLKEKHSVVLDQAYTRAIPYILTTDLQCALCKEASSNYLHLDGHMNAHYNNYVCYDCGDSFLSSNRLKQHVKIHNIGKFDCSFCDKVFTLDKYRRKHEELVHEQISKFKCLYCEEKFTTEYLRHQHYVNNHPEKVKSITCEFCGESFTWKQYYTSHMRKKHQNKKPYECPKCEKKFYANYELKEHMLRHAGFKNFECLLCHKKYVSMNSLKAHMKQHIKNPGQPNFTHCWVEPIDLNHKYALTVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -