Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438904.1:3883877-3897239[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.1e-06 0.00057 21.8 1.7 1 23 224 246 224 246 0.98

2 9 3.9e-08 5.5e-06 28.1 1.6 3 23 254 274 252 274 0.98

3 9 0.00013 0.019 17.0 0.3 1 23 280 302 280 302 0.98

4 9 1.4e-05 0.002 20.1 1.7 1 23 308 330 308 330 0.99

5 9 3e-05 0.0041 19.1 1.7 2 23 510 531 509 531 0.96

6 9 3.8e-09 5.3e-07 31.3 1.6 1 23 537 559 537 559 0.98

7 9 0.0032 0.45 12.7 0.6 3 23 567 587 565 587 0.97

8 9 8.3e-05 0.012 17.7 1.5 1 23 593 615 593 615 0.99

9 9 0.026 3.6 9.8 0.8 1 23 621 645 621 645 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.1e-06	0.00057	21.8	1.7	1	23	224	246	224	246	0.98
2	9	3.9e-08	5.5e-06	28.1	1.6	3	23	254	274	252	274	0.98
3	9	0.00013	0.019	17.0	0.3	1	23	280	302	280	302	0.98
4	9	1.4e-05	0.002	20.1	1.7	1	23	308	330	308	330	0.99
5	9	3e-05	0.0041	19.1	1.7	2	23	510	531	509	531	0.96
6	9	3.8e-09	5.3e-07	31.3	1.6	1	23	537	559	537	559	0.98
7	9	0.0032	0.45	12.7	0.6	3	23	567	587	565	587	0.97
8	9	8.3e-05	0.012	17.7	1.5	1	23	593	615	593	615	0.99
9	9	0.026	3.6	9.8	0.8	1	23	621	645	621	645	0.95

Sequence Information

Coding Sequence: ATGGACACGTCTTCAGAAGACCGAATAGCTTATCAACCAAACACGACAACACCGTACGTCCTCTACAAAGATGGCGTGGAGCGAGCCCCCCCTGGCACGCAGTGGGGCAGCGGAATGCTGGACGGTGGATACCAGCCCATGCAGCACCAGAGCCCCGGCGGGCCCTCACCACAACCCGAGCCGCAACTCGCGTCACCCGCGCCCTCGCCCTACCCTCCGCCACCACCCCCAGACCCCACCGGTGCCGCAGAGGACGCTGCCCAGCAACTCGCTCAACAACAGGCACAGCAGCAAGCGCAACAACAACAGCAACAGCAGCAGCAACAGCAACAAACTTCTCCTGACCATATGCAAGTGGAGCAACAGCTCCAGAGCCAAACCCAGCCACAGCCTCCCTCGCAGGATCACCTGGACCGCACGCCGTGCTTCGTCCCGCAGCCGGATCTGCAGCAGCAGTACACGCCGTACTTCAAAGAGGCGCGACCAACGAGCCACATGCTCGGCACAGGCGGCTTCCCTTTACACTATCTGAAACAGAACGGTGGCGTGCTGTCCCTAGAAGGTCCTCTAGACCAGTACGGGGCGCCTGATCTCCGCCACCTGCCAGACATAGTGCAGCCTGAGCCGCCGAAGCCGCGGAAGCACAACCCGAACTCAGAGCTCCGCCTGTTCAAGTGCCTGACGTGCGGCAAAGACTTTAAGCAGAAGTCGACGCTGCTGCAGCATGAACGCATCCACACAGACTCGCGGCCGTACGGGTGTCCCGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCATCTCACGCAGCACCTGCGCATCCACGCGAACGAGAAGCCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATACCCCCCGCCCCGCGCGCGCCGCCCGCACTGACCCGCCGGTCACTGCCGCCGGCGCCCGCGCTCCCCGCCGCTCCCCGCACTGTCGATTCGGTCTCGCATCCATTGGCCTTCCTATCAAACAAATTTTCGGTTCCGTCATCGCCCGTGTAACGCAGGGCGCCCGCGAGACGCGGAAACGACCGCTGGACGCTCCCGTAACCGTTCCCAACGTTTCGCCGCATCTCATCTTCAAGAATGGGACAACACCGACGCTGTGGCCCCAGGACGTGCCGTTCCCGGCCGATGAGAACAAAGAAGAGATCCAGTCGACGTTCGGCGACGCGGATGGACAAAACGGAGATCCGCGCGGCTCCTGCTTCTCACCAGGTGACACGGCGCAATACCCTGCTTACTTTAAAGATACGAAAGGTCTCAATCACTCAGTCTTCACCACAGGGCTTTCGCTGCAATATTTGAAAGGTGGCAAGCTACCAGACGTACTCGGAGGACGGGCGATGCCCCTGTACGTGCGCTGCCCGATTTGCCAAAAGGAGTTCAAACAGAAGTCAACGCTGCTACAGCACGGGTGCATTCACATAGAGTCACGTCCATACCCCTGTCCCGAGTGCGGCAAGCGTTTCcgacagcagtcgcacttgacGCAGCACCTGCGCATCCACACCAATGAGAAGCCGTACGGCTGCGTGTATTGCCCGCGGTTCTTCCGCCAGCGGACCATTCTCAACCAGCACTTGCGCATCCACACCGGGGAGAAGCCGTACAAGTGCACCCAGTGCGGCAAagacttccgacagaaggcgatCTTGGACCAGCACACGCGGACGCACCAGGGCGACCGGCCCTTCTGCTGCCCAATGCCTAACTGCCGGCGGCGCTTCGCCACGGAGCCGGAGGTGAAGAAGCACATCGATAACCACATGAACCCGCATGCGGCCAAGGCGCGGCGCGCTGACGCCAACAAGACGCCGCGCCCGCTGCCACCCGCTGCCGCCGTGGTGAAGCCGGAGCTGTACTTCCCGCAGTGCTACGCGCCGCCGTTCCAGCAGTTCGGCGGCGCCACCGAGTTCAAGCCGTCCGTAGGTCCGGGCGCGCCCGTGGCCTGCCTGCCGGCGCAGTga
Protein Sequence: MDTSSEDRIAYQPNTTTPYVLYKDGVERAPPGTQWGSGMLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPPPPPDPTGAAEDAAQQLAQQQAQQQAQQQQQQQQQQQQTSPDHMQVEQQLQSQTQPQPPSQDHLDRTPCFVPQPDLQQQYTPYFKEARPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYGAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTPRPARAARTDPPVTAAGARAPRRSPHCRFGLASIGLPIKQIFGSVIARVTQGARETRKRPLDAPVTVPNVSPHLIFKNGTTPTLWPQDVPFPADENKEEIQSTFGDADGQNGDPRGSCFSPGDTAQYPAYFKDTKGLNHSVFTTGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADANKTPRPLPPAAAVVKPELYFPQCYAPPFQQFGGATEFKPSVGPGAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00772240;
90% Identity: iTF_00888518;
80% Identity: -