Dmen047892.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:7152139-7157102[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.001 0.14 14.3 0.1 1 23 95 118 95 118 0.94 2 17 0.081 11 8.3 0.0 2 23 147 169 146 169 0.94 3 17 0.0024 0.34 13.1 0.7 1 23 217 239 217 239 0.98 4 17 1.1 1.5e+02 4.8 1.1 1 17 244 260 244 264 0.78 5 17 0.44 62 5.9 0.1 2 23 276 298 275 298 0.93 6 17 0.00014 0.02 16.9 2.7 1 23 305 328 305 328 0.98 7 17 0.0089 1.2 11.3 4.8 1 23 334 356 334 356 0.98 8 17 8e-07 0.00011 24.0 0.9 1 23 362 384 362 384 0.99 9 17 0.012 1.7 10.9 3.4 1 21 390 410 390 411 0.95 10 17 0.087 12 8.2 1.5 1 23 479 502 479 502 0.94 11 17 0.0014 0.2 13.8 1.4 2 23 575 596 574 596 0.97 12 17 0.0097 1.4 11.2 0.0 1 23 600 622 600 622 0.97 13 17 0.12 17 7.7 0.2 2 23 658 680 657 680 0.93 14 17 6.5e-05 0.0091 18.0 0.7 1 23 687 710 687 710 0.98 15 17 1.5e-06 0.00021 23.2 1.3 1 23 716 738 716 738 0.98 16 17 6.2e-05 0.0086 18.1 1.7 1 23 744 766 744 766 0.99 17 17 1.4e-05 0.0019 20.1 0.4 1 23 772 794 772 794 0.99
Sequence Information
- Coding Sequence
- ATGACTTGGTGTTGCTTTTCCCTAACATTTTATATTCATGAATTACCAATTTATGCTTTAGGTAACCAAGAAACAGTGAGCAAGGAAGTTGAAATCAAACCTTTAGAACCAGCAGTATTAGTTATCGTAAGACCAGAAAGAAAAACCAAATCGCAGGTAACTACgcccaaacaaataaaattcaagCAGCAACCCACTGAGTTGGAGAAACATCGCTACAACCTCGTGCAAATCTTAAAATATTCTAACGGAACACCAATAATGCGTCGTGGAGGCGTTGGATACGTGTGCAGCTACTGTTTCGAAGAATTCCCAGAGCCTGGTGACCTAAAAAAGCATACACTAGCAGAACACACGTGTGAAACAGACCCTACAAGCAGATACGTTAAAAACCGTAGCATTACAGAATACAATGTCAAAATAGACATCACTAACCTCGAGTGCACGATATGTGCTAAAACCATAGACAGTCTGGAAGATTTATTGACCCATTTGCAAGAAGAGcatcaaaaaatgatttacaCTGACATTTCAAATCATTTCATTCCTTTCAAATTTCTAACAGATGATCTGACTTGCTGCCTATGTCAGAGTGTTTTCGACAAGTTTAAAATACTTCAAGAACATATGCATTCACACTACAGGAACTTCGTATGCGAAGATTGCGATTCTGGGTTCGTTACTCGAGGGTGTTGGCTCAGACATCGCGAAACACACTTAAAGGGAAATTTCCCTTGCAGCTTCTGTTCGAAAGTTTTTGACACGATGATGAAGAAGCGGTATCATGAGAGATGTATCCATATTTACGCTGATAAACTTCCCAATAAATGCGCATATTGCAACGTAGGTTTTAAAGAGTACGCTGATAAGGAAATTCACATGACTGAAGTCCACGGTGCTAAAGAATCACTGTACAAATGTAGTTCTTGTGACAAAAGTTATAAAAGCAAGCGTAGACTGACGGTGCACGTCAAAAGAGACCATCTATTAGAGAGGAAACACAAATGTCTGACGTGTGACATGACATTCTTTTCTTCTCATGCTGTTAAGCAGCATATGATCAAACACACTGGGGAGAGGAACTTTCAATGCACAATTTGTCTGAAATCTTTTGGGAGATATTCCAATCTCGTCAGCCATATGAGAATCCATAACGATGATCGGCGGTTCAAATGTGAATTTTGTGGTTTAACGTTTATTCAAAAGTGTACCTGGAAAAGCCATTATAAACAAGAAAAAGTGGCTGCAGCTACGAACATCAAAATAGAACCGAAATCTGAAGAAATAGTACCGAAAGAagaaaatatacaaataaaacCGGAGTCAGCACCTAAACCACGCATAAAGAGACTATTACACAAGCATGTCCACAATCTAAAACTAATACTAGAATCTTCGAACGCCACGATGATAAACAAACATTGCGATATGGGATATCTGTGCTGCTACTGCACGGATACTTTCAGTGAACCCACAGATTTGAAAGAACACACTTTATCGGAACATAATCATGAAAAAAATAACCCTAGCCACATAAAAGCCAGATCAGCAGCTGCGTTCTTAGTCAAACTGGACATTACAAACCTAAAATGCATTATATGCAGCGAAAGTATAGATTCTGCAGAAGATCTATTCGGCCATCTGACAGAGAAACATAATAAGAATTTTCATACTGATattaaaaatcaaatatttccTTTCAAGTTCAATACGAAGCAACTGAAATGCAGCAAATGTGCGGTCGCTTTTGCCACTTTCAGCTCATTAACCGAGCATATGCACAGACATTACCAAAATTTCATTTGCAAGGAATGCCTTGCTGGATTCATCAATCATGCGGCGTTAGCCAATCATATCATCATCCACAAGAAAGGGGTCTTCAACTGCCGATATTGTGctgataaattcgacaacgtctTGAAGAGAAGGAACCACGAGTTTCGCAACCATCGCCGAACTGCTAACTCAATTAAATGCAAGTTCTGCAATGAAAGTTTTCAAGAACCTATTCAAAAGGAAGCGCATCTGGTTACGGTGCATGGAGTTACTCCTCGAAAATATGAGTGCACAGCTTGTGAAAGGAACTTTCCTAGTAGTAGTTTTCTTCGGGCACATATTAGGCGATTCCATCTGCATGAGAGAAATCACAAATGTTCTGAGTGTGACAAGGCATTCTTCAGGAATGGCGATCTCAAAAGTCACATGATAGTTCATACTGGGGCTAAGAATTTCAAATGTAGCGTTTGTTCTAAATTCTATGCAACGAAATCTATTCTGAGACAGCATATGAGAATTCATAACAATGAAAGGCGCTTCAAATGTACAATATGTGAGCAGGCATTTGTGCAGAAACCTAGTCTTGACTGGCATATGAAGAAGCATGCATAG
- Protein Sequence
- MTWCCFSLTFYIHELPIYALGNQETVSKEVEIKPLEPAVLVIVRPERKTKSQVTTPKQIKFKQQPTELEKHRYNLVQILKYSNGTPIMRRGGVGYVCSYCFEEFPEPGDLKKHTLAEHTCETDPTSRYVKNRSITEYNVKIDITNLECTICAKTIDSLEDLLTHLQEEHQKMIYTDISNHFIPFKFLTDDLTCCLCQSVFDKFKILQEHMHSHYRNFVCEDCDSGFVTRGCWLRHRETHLKGNFPCSFCSKVFDTMMKKRYHERCIHIYADKLPNKCAYCNVGFKEYADKEIHMTEVHGAKESLYKCSSCDKSYKSKRRLTVHVKRDHLLERKHKCLTCDMTFFSSHAVKQHMIKHTGERNFQCTICLKSFGRYSNLVSHMRIHNDDRRFKCEFCGLTFIQKCTWKSHYKQEKVAAATNIKIEPKSEEIVPKEENIQIKPESAPKPRIKRLLHKHVHNLKLILESSNATMINKHCDMGYLCCYCTDTFSEPTDLKEHTLSEHNHEKNNPSHIKARSAAAFLVKLDITNLKCIICSESIDSAEDLFGHLTEKHNKNFHTDIKNQIFPFKFNTKQLKCSKCAVAFATFSSLTEHMHRHYQNFICKECLAGFINHAALANHIIIHKKGVFNCRYCADKFDNVLKRRNHEFRNHRRTANSIKCKFCNESFQEPIQKEAHLVTVHGVTPRKYECTACERNFPSSSFLRAHIRRFHLHERNHKCSECDKAFFRNGDLKSHMIVHTGAKNFKCSVCSKFYATKSILRQHMRIHNNERRFKCTICEQAFVQKPSLDWHMKKHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -