Dmen047887.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:7137055-7142681[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0076 1.1 11.5 0.2 1 23 91 114 91 114 0.96 2 18 0.01 1.4 11.1 0.1 2 23 146 168 145 168 0.96 3 18 2.8 3.9e+02 3.4 6.3 2 23 191 212 190 212 0.97 4 18 4.6e-06 0.00064 21.6 0.1 1 23 216 238 216 238 0.98 5 18 0.33 46 6.3 2.4 1 23 243 266 243 266 0.93 6 18 0.00042 0.059 15.5 1.1 3 23 305 326 304 326 0.95 7 18 6.4e-07 9e-05 24.3 0.6 1 23 332 354 332 354 0.98 8 18 2.6e-05 0.0036 19.3 1.4 1 23 360 382 360 382 0.98 9 18 0.00012 0.017 17.2 0.3 1 23 388 411 388 411 0.98 10 18 0.0084 1.2 11.4 2.0 1 23 477 500 477 500 0.96 11 18 0.014 2 10.6 0.3 2 23 529 551 528 551 0.96 12 18 3.5e-05 0.0049 18.8 0.3 1 23 599 621 599 621 0.98 13 18 0.005 0.7 12.1 0.7 1 23 626 649 626 649 0.93 14 18 5.9 8.3e+02 2.4 0.4 2 12 657 667 657 677 0.90 15 18 0.00021 0.03 16.4 0.6 2 23 687 709 686 709 0.96 16 18 0.0012 0.16 14.1 1.0 1 23 715 737 715 737 0.94 17 18 0.0029 0.41 12.8 1.7 1 23 743 765 743 765 0.98 18 18 9.6e-05 0.013 17.5 0.6 1 23 771 794 771 794 0.97
Sequence Information
- Coding Sequence
- ATGAAAAGTTTGGAAGAATCCGCATATTTATACGCTAACTTGCTTCTAAAGCAAAGTGCTAATATTGTAGAAATAAGTACTCGCGACAAACTTACCAAGGCTAGTGAATTAGATGAAGATTATCAACCACCATGGATAAAAAAGGAAAGAAAGGAATCAAGAAGAAAGATCAATGAAACCGAACCAAAAATCACGAAGCAGCGCACTAATCTGAGAGAAATCTTTGCTTGCTCCAATGCTACACCCATGGTCGGAGTTAATTATCAAGGATATATGTGTGGCTACTGTGACGATCAGTATCAAGACCCAGCAGATCTGAAGAAGCATACACGTGGCAATCATAAAGTAAACCTTTACAACGCAGAAATTCCAAAAACGTATAGaagtaaaaaaataccaaatGAGTATGGAATGAAGCTAGACATAACTGATTTGCGATGTACGCTTTGCGATACTGACATAGACACATTAGAAAACTTGATGAAACATCTAGAAACGGACCACAAAAGGGTTATGCACTTCGACATCAAACAACATATCTTACCGTTCAAGTTTAGTGGTGATACCATGAAATGTTGCATGTGTCCAAGCTTTTTTCAAAAGTTCAGGAGTTTAGTAAAGCATATGCACATGCATTATAGAAATTATGTCTGCGATGTCTGTGATAAGGGCTACGTCTACAAATCAAATCTCGGGGCACACATGGCCACACATAGAACAGGCGTCTTCAAATGTAGTTCGTGCCCTAAAACTTATTTGAATAATAAGAGGTTGAAGAGTCACGAATATAAAGTTCACGTTAATAAGGGTATGAATCTAAAGTGTGAATACTGTTGTGACAGATTTAGAAATGCTATAAGAAGAGATGAGCATTTGGCAGAAGTGCATGGAGTTGAACTGAAGATCGTCAATTGCCGTGCATGCAATAAGATATTTCGTAATAGAGACGCGTTAAGGGTCCACACGAGGCGAGACCATTTGATGGAGAGGCGGTTTAAATGTACAGAATGCGATAAGGCATTTTACCAAGCAGCTAATTTAAAGCTTCACATGGTTAAGCATACAAAAACGAGAGAGTTTCAGTGCACCGTGTGCATGAAGTCTTATAGCCGGAAGGAAACTTTAAGACAGCATATGGAAATACACAGTGACGTTAGACGGTTCAAATGTGAGCGTTGCGGTCAAGCATTCGTGCAGAAAGCTGGCTGGAAAGGACATATGAAAAGTAAGCATGGTACTCGAGATAAACCTATGAAGgaacataaaacaaataatggatTTAAAACAAAACGGAAAAAAGGAGGTCTCACTAAGGTCGGTAAAGCAAGGATAGAAATGgtgaaaaaaatgaaaaaacacCACGAAAACCTAAAAGAAATTCTGACATGCTCAAATGCTACGCCTTTTGTCGGGGCTGATTATCGAGGTTATATGTGTTGCTACTGCAAATCTCAGTATCCAGACCCTGCAGACCTGAAGAAACATACTCGGGACAATCATAAAGGCTTATACAACTCGGTAATACCAAGTGGTAATAAGTACACAATAAATGAGTTTATTGTAAAGCTGGATATTACTAATTTACGATGCACACTCTGCGATACTGACAGAGACACAATAGAAAACTTGATAAAGCATCTAAAAACTGACCACAAAAGACCTATGCACACCGAAATTACGAATCAACTATTTCCATTTAAATTTAACAGCGACATCTTGAAATGTTGTATGTGCTCGAGTCACTTTGAACAGTTTAGATGTTTACAAAAACACATGCACATTCATTACAGGAATTTTATTTGCGATGAGTGTGACATGGGGTACATGACGAAAGGAAGTCTTAGACGACACATCAACAGACATTATACAGGCGTTTTCAAATGTAATTTGTGCTCTAAAACCTTCGACACTCAAGAGAAGGCTGACAGTCATGAAAAAGTTGTTCACGTATACAAGGGTTTCAAAAATACGTGTAAATTCTGTACTGAAAGATTCAAGAATTTTATGAGAAGAGACGAGCACTTAGTGGAAGTCCATGGACTCAAGTTGAAGGTTGTCAAATGCCAAGCGTGCAACAGGACGTTTCCAAACACAAGCGCACTTAGGATCCACACGAGGCGAGATCATTTGATGGAGAGGCGGTTTAAATGTACAGAATGCGATAAGGCATTTTTCCAAGCAGCTGATTTAAAGTTTCACAAGGTAACGCATTCAAAAACCAGAGAGTTCCAATGCACTGTGTGTATGAAGTATTATAGTCGGATGACAACTTTAAAACAGCATATGGAAATACACAGTGACGTTAGACGGTTCAAATGTGAGCGTTGCGGTCAAGCATTCGTGCAGAAAGCTAGCTGGAAAGGCCATATGAAAAATAAGCACGACGAGCTGGTCTGA
- Protein Sequence
- MKSLEESAYLYANLLLKQSANIVEISTRDKLTKASELDEDYQPPWIKKERKESRRKINETEPKITKQRTNLREIFACSNATPMVGVNYQGYMCGYCDDQYQDPADLKKHTRGNHKVNLYNAEIPKTYRSKKIPNEYGMKLDITDLRCTLCDTDIDTLENLMKHLETDHKRVMHFDIKQHILPFKFSGDTMKCCMCPSFFQKFRSLVKHMHMHYRNYVCDVCDKGYVYKSNLGAHMATHRTGVFKCSSCPKTYLNNKRLKSHEYKVHVNKGMNLKCEYCCDRFRNAIRRDEHLAEVHGVELKIVNCRACNKIFRNRDALRVHTRRDHLMERRFKCTECDKAFYQAANLKLHMVKHTKTREFQCTVCMKSYSRKETLRQHMEIHSDVRRFKCERCGQAFVQKAGWKGHMKSKHGTRDKPMKEHKTNNGFKTKRKKGGLTKVGKARIEMVKKMKKHHENLKEILTCSNATPFVGADYRGYMCCYCKSQYPDPADLKKHTRDNHKGLYNSVIPSGNKYTINEFIVKLDITNLRCTLCDTDRDTIENLIKHLKTDHKRPMHTEITNQLFPFKFNSDILKCCMCSSHFEQFRCLQKHMHIHYRNFICDECDMGYMTKGSLRRHINRHYTGVFKCNLCSKTFDTQEKADSHEKVVHVYKGFKNTCKFCTERFKNFMRRDEHLVEVHGLKLKVVKCQACNRTFPNTSALRIHTRRDHLMERRFKCTECDKAFFQAADLKFHKVTHSKTREFQCTVCMKYYSRMTTLKQHMEIHSDVRRFKCERCGQAFVQKASWKGHMKNKHDELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -