Basic Information

Insect: Diarsia mendica
Gene Symbol: -
Assembly: GCA_949316265.1
Location: OX438901.1:5125421-5133453[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0038 0.53 12.4 6.0 1 23 132 154 132 154 0.98

2 12 0.012 1.7 10.9 0.4 2 23 161 182 160 182 0.96

3 12 9.2e-05 0.013 17.5 3.3 2 23 234 255 233 255 0.97

4 12 1.3e-05 0.0019 20.2 1.1 1 23 262 284 262 284 0.96

5 12 3.4e-05 0.0048 18.9 3.3 1 23 290 312 290 312 0.97

6 12 2.6e-05 0.0036 19.3 3.5 1 23 318 340 318 340 0.99

7 12 3.5e-08 4.9e-06 28.3 0.8 1 23 346 368 346 368 0.96

8 12 6.4e-06 0.00089 21.2 0.7 1 23 374 396 374 396 0.97

9 12 1.7e-06 0.00024 23.0 0.4 1 23 402 424 402 424 0.98

10 12 0.0014 0.2 13.8 6.0 1 23 430 452 430 452 0.97

11 12 5.5e-07 7.6e-05 24.5 2.1 1 23 458 480 458 480 0.98

12 12 0.0038 0.54 12.4 0.5 1 20 486 505 486 508 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0038	0.53	12.4	6.0	1	23	132	154	132	154	0.98
2	12	0.012	1.7	10.9	0.4	2	23	161	182	160	182	0.96
3	12	9.2e-05	0.013	17.5	3.3	2	23	234	255	233	255	0.97
4	12	1.3e-05	0.0019	20.2	1.1	1	23	262	284	262	284	0.96
5	12	3.4e-05	0.0048	18.9	3.3	1	23	290	312	290	312	0.97
6	12	2.6e-05	0.0036	19.3	3.5	1	23	318	340	318	340	0.99
7	12	3.5e-08	4.9e-06	28.3	0.8	1	23	346	368	346	368	0.96
8	12	6.4e-06	0.00089	21.2	0.7	1	23	374	396	374	396	0.97
9	12	1.7e-06	0.00024	23.0	0.4	1	23	402	424	402	424	0.98
10	12	0.0014	0.2	13.8	6.0	1	23	430	452	430	452	0.97
11	12	5.5e-07	7.6e-05	24.5	2.1	1	23	458	480	458	480	0.98
12	12	0.0038	0.54	12.4	0.5	1	20	486	505	486	508	0.94

Sequence Information

Coding Sequence: ATGTTAGACATAACGACGTCGTGTCGGACTTGCATGAAAGACAATGTGACTTTGGTGAATTTGTATGAAAAAGTTGAAATTGAGGAAAATCGTCTTCAATTAGCTGAGTTACTTGTGCAGTGTACTACAACTGAGGTCTCCGAGGTGGATGGGCTGCCACAGCACCTTTGTGATGCCTGTGTTAAGCTGCTGCAACTTGCATACTCATTCCGTAAGCAGGCGGAAAAAGCACAAGATGAATTCAGAAAACTCCTACAAAGTGACGTAAAAACAGAACCTGATGAAGTTGACCTCAAAACAGAAAATGATCACAACTATTTTGCTTCTTATGAATCTTATGATGACTTCAGTTTCAACACTGATATTTCCAAAACTGAGATCCAAGAATATGACTACTCATGTACAAAATGTAACAAACATTTTACAAAAGAGAAAAGATTCTTGAAACATTTAGCAACACATAATGAGGATTTATCATTAGAATGTGACATTTGTAGAAAGTTGTATGCCAATCAGACACTATTGGATAAACACAAAGCTAAACATCTTAAGAATATGTGTTTATTTAATGATCAAAGCTTTGTGAATGAGACACAATTAGTTGAAGAAAATATGGTGCAACACACTGAAGAAATTGAAATTAAAACTGAAAATGAGAAACCGTCCACCACAGATATATATAAACCATCAAAGTTATTAGAATGTCTAGATTGTCATTTAACATTCACAAAGCAAAGATCACTGTCAATGCACATGAGAAAACatagaaataaaaagaaagattTTATTTGTGATACTTGTGGGAAAACATTTGCTATGAAACATTTATTGCAGCGGCATGTGGTGATGCATAGTGAGGTAAAGCCACACAAATGTGAGAACTGTTCTAAAACATATGCGCGGCGGGACCAGCTCATGTCTCACATGTACTCTCATAAGAAACACAAGCCTTATGTCTGTGAATACTGCAAGAAAAGTTTTGGTCAAATGTGCAGTCTGAAGGACCATCTCCGGACCCACACTGGAGAGACCCCGTACTTGTGCTCCGAGTGTGGCAAGGGTTTCTCTAACAGCTCCAACCTTAGGCAGCATATGTTGAGGCATACCGGAGTCAAGCCGTATGCTTGTAACTTATGCCCTAAAACATTCTCTACTAAAGGTCAAATGACATCACACGTGACCACACACACTGGGAAGCACCCCTACAAATGCGAGGAGTGTGGCGCCGCCTTCACCACGCAGAACTCGCTGAAGAAACACTCCATGATACACCTGGCTATACGGCCGTTTGCGTGTGAGACTTGTAAAATGAGATTCACCTGCAAAGACCATCTGAAGCGCCACATTAGAATCCACACCggtgaaaaaccatacaagtgCAAGTACTGCGACCGAGCGTTCTCACAGAGCAACGACTTGGTGAAGCACACGCGCCAGCATATCGGACAGAACACATACCAATGCACAATATGCGAGTCCCGGTTCCGTCTCCTATCAGAACTAAAGCAGCATTACCCGGTCCACTTCGCAAACGGGACTGCCCCTGAAATGCCTACCAAAGACAACATAGAACCAGTTGACAACGACCGTTCTAAACCTCTGCCAATGTTAGAAAGCCTTTTGACCttcaaaaaagagaaaaatcttATTCTAAAAGCGCCAGAAGTCGATAAAGAACTTCAGATGTTGACTTTAAAGCCTCCTGAAAGTGAATCCTCGCGAACTCGATCTTGTGGGGAATCCAATAGATTCGTAATTACTTTTAACAGTTGTGATACGAATGGGCTTGTTAATGGCATTACTATTAATATACCGCCTAAAGAAAGCtag
Protein Sequence: MLDITTSCRTCMKDNVTLVNLYEKVEIEENRLQLAELLVQCTTTEVSEVDGLPQHLCDACVKLLQLAYSFRKQAEKAQDEFRKLLQSDVKTEPDEVDLKTENDHNYFASYESYDDFSFNTDISKTEIQEYDYSCTKCNKHFTKEKRFLKHLATHNEDLSLECDICRKLYANQTLLDKHKAKHLKNMCLFNDQSFVNETQLVEENMVQHTEEIEIKTENEKPSTTDIYKPSKLLECLDCHLTFTKQRSLSMHMRKHRNKKKDFICDTCGKTFAMKHLLQRHVVMHSEVKPHKCENCSKTYARRDQLMSHMYSHKKHKPYVCEYCKKSFGQMCSLKDHLRTHTGETPYLCSECGKGFSNSSNLRQHMLRHTGVKPYACNLCPKTFSTKGQMTSHVTTHTGKHPYKCEECGAAFTTQNSLKKHSMIHLAIRPFACETCKMRFTCKDHLKRHIRIHTGEKPYKCKYCDRAFSQSNDLVKHTRQHIGQNTYQCTICESRFRLLSELKQHYPVHFANGTAPEMPTKDNIEPVDNDRSKPLPMLESLLTFKKEKNLILKAPEVDKELQMLTLKPPESESSRTRSCGESNRFVITFNSCDTNGLVNGITINIPPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00445430;
90% Identity: iTF_00446425;
80% Identity: -