Dmen030240.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438902.1:6599145-6601967[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-11 5.4e-08 34.0 0.0 5 41 22 58 19 61 0.91
Sequence Information
- Coding Sequence
- ATGGATAAACAATCCAAAGAAACGAATGACAAACTTACACGTCTGAAATACAATAGATCACGGATCAAAGACGCTATAAATTCGGTTAGGAATGATGTCATGAGCATTAGATCAGCTTCCCGATTTTATGGAATACCCAGAACCACTCTTCAGGACCGATTACATGGAAGGGTAGATGAAGAAAAATGTTCTATCGGTAGACACACAGTCCTGAATGAAATTGAGGAGCAAGCTCTAGTAGATTGGCTCATAAATCTTGCGAAATGTGGTTTCCCGCGAAAACGCACCGACCTCATTAATACCGTCGAAAAAATTATTAGAGATGACGGTAGACCGAACGTATTTAAAAACGGAAGACCAGGTGTCAAATGGTACAATGGTTTCATAAAGCGTCATCCGAGCCTAAGTGAAAGAGCCCCTGAAGCTATTGGTACAGCTAGAGCCATTGTCACCGAAGAATACTTAAGGAAATGGTTTCGTGATCTGGAAAGTTACTTAATCGATATTGGAATGCAGGATGTTTTAGAGGACCCGCGGAGAATTTTTAACGGTGATGAAACAAGCTTCAGTATTTGTCCAAAATCAGGCAAAGTTATAGGTCCCAAAGGTTGGAAAAATATTTACGAGTTGAAAAAAGGAAATGAAAAGGAAACAATCACGGTACTCCTAGTGATTTCTGCAAGCGGCGAGTCTTTACCGCCTATGGTGATATTTCCGTATGTCCGAAAACCTCCAAAAGACATTACAGACAGTGCACCGTCATCATGGTTTATCGGTGTCTCAGATAGCGGCTGGATGAAGAGCGGATTGTTCTATGAATACGTAGCtaattgttttaatgattgGCTTGAAACTAACAACATTTCGAAACCCGTGCTGCTGTTGGTCGACGGCCACAAGTCCCATTTGACCAAAGACTTAAGTAAATTCTGTGAAGATAATGGAATTATACTTTACGCTCTTCCACCCAACACCACACATATAATGCAGCCTGCAGATGTCAGTGTTTTCCGACCACTTAAACTTCAATGGAAGAAATCGGTGAAAGATTGGCAGGATAGTGGTGAAAATTCAAATAAGACCTTGACAAAAGTCACTTTTTGTCCATTATTAAAACAAGCTATAAAAGGAGTAACGTCTCAAACCATTAAAAATGGATTCCGTAGATGTGGACTGTACCCTTTTAATCCTAATGCAGTCGATTacacaaaatgtataaaaaataccATTGAAAAATTAAATGAGCAGGAGAGTATGGACAATACAAATATAATTGCAGAGACTGAACTTAAAACAGCTGTTAAAGTGATAAATCAATGCAAAACGCAATTGAGAGATGCTGGTATAGATCCAAGCGTACTCGAAAAAATCATTAGAGAAAAAGAATATAGTGCAAATACTTGTCAGAGCCAAAAAACAAAATCTCTCGAACTGAACGGATCAAACCTAAATATTAAAACGAATAAAAGATCATCAATAGACAAAGaagaaataattaatattacaaataataataatccagaTATGAATTTGGCAATTGACGCTAATTCACAAGTTGAGCTATTCATTGTAAATGACGAAGGAATGTTAGTAACAGTTGATAGAAAATTATCTCCAATTCCAAGTCTAGAACCATCAAGTATTTGGCACTCGATTCCAAAAATTACAAGTGCAGACAAATTTTCCGAATCAGCTATAGTTCTACCACTAGATTCTGACATGTgcccacaaataaaaataaatacacccAACCGGTCGAGCTCGCCAGATATTCCTCCACAAACTATGTCTGTTACCGCAGATATCCATTACACAGCCATAGATAAAAACATTATTCAAAAAGAACAGAATCATAAAGTCAATCCCCTCAGTCGTCGGATAAGAACAACAACAACACCAGTTATTGACGACGAAATTTGCACCGAAGCCGATTACATCGCAGGCGAGTTAACTGGTTGTGAAAAAGAACAATTTCTAATGAATGTCGACTTAGCTCCGAACAAATTACCACTGGGCCCACATAATTGCAAATCCTGCACTGGCAAATGCAAATTAGAAATGATCAGTACTCCGAGAGATACGTCAATGTTCTGCACCAGCAGTAATGCATTTGACAACATCGACGTTGCCTCTGATTTTGATTTTTCCCTTCCGGGATCTCCGTCATTGAGTATTACGTCGGAAATCATCAATTCTCCATCCACAAATATTTTTGAGGGTTCCTCGCCGACTGCTAGACGTCTAACTTCTAAGCCATCTACTCCAACATCTAGGAATTCTTTGTCACCAGCATTTAGAAACCATTTGTTTGCCCCAAAATCTCTTAATTTTGGCAATAAAAGAAAGTCTAAGGGGGATCCAATGCCATTAGCTATATCTTCGGAAAAATGGAGACAGTTTACGCGAGAAAAAGATGacgaaaaagaaaacaaaataaaacagcgtgaagaaaggaaaaaacgaatcgaaaataaaaaaattgaaaacgccagaaaaaagttaaaaatgacTGAAGAGAAGACAAAGCGTAAGAGGAAGCCAGCAAATAAAGATATGACAAAGAGACAGTCTGACGAAACTGAAAACACAGTTGTCATTTCAGTATCACCTCTTAGAAAAGAAATTACCAAAGAAAAAATTCTATGCGCGGGTTGTGACGAAGAGCTGATTAGCGATGTTGAAGAAGACGAATTAAAGAATATTGGCTGCGATATTTGCCCTAAATGGTTTCATTTGGGGTGCACAACGCAGCATGGCAGAAATTATATAGATGTTGCAAAAGAAGATTTTACCTGCCATCACTGCCTTATTCATTTAGTGTGA
- Protein Sequence
- MDKQSKETNDKLTRLKYNRSRIKDAINSVRNDVMSIRSASRFYGIPRTTLQDRLHGRVDEEKCSIGRHTVLNEIEEQALVDWLINLAKCGFPRKRTDLINTVEKIIRDDGRPNVFKNGRPGVKWYNGFIKRHPSLSERAPEAIGTARAIVTEEYLRKWFRDLESYLIDIGMQDVLEDPRRIFNGDETSFSICPKSGKVIGPKGWKNIYELKKGNEKETITVLLVISASGESLPPMVIFPYVRKPPKDITDSAPSSWFIGVSDSGWMKSGLFYEYVANCFNDWLETNNISKPVLLLVDGHKSHLTKDLSKFCEDNGIILYALPPNTTHIMQPADVSVFRPLKLQWKKSVKDWQDSGENSNKTLTKVTFCPLLKQAIKGVTSQTIKNGFRRCGLYPFNPNAVDYTKCIKNTIEKLNEQESMDNTNIIAETELKTAVKVINQCKTQLRDAGIDPSVLEKIIREKEYSANTCQSQKTKSLELNGSNLNIKTNKRSSIDKEEIINITNNNNPDMNLAIDANSQVELFIVNDEGMLVTVDRKLSPIPSLEPSSIWHSIPKITSADKFSESAIVLPLDSDMCPQIKINTPNRSSSPDIPPQTMSVTADIHYTAIDKNIIQKEQNHKVNPLSRRIRTTTTPVIDDEICTEADYIAGELTGCEKEQFLMNVDLAPNKLPLGPHNCKSCTGKCKLEMISTPRDTSMFCTSSNAFDNIDVASDFDFSLPGSPSLSITSEIINSPSTNIFEGSSPTARRLTSKPSTPTSRNSLSPAFRNHLFAPKSLNFGNKRKSKGDPMPLAISSEKWRQFTREKDDEKENKIKQREERKKRIENKKIENARKKLKMTEEKTKRKRKPANKDMTKRQSDETENTVVISVSPLRKEITKEKILCAGCDEELISDVEEDELKNIGCDICPKWFHLGCTTQHGRNYIDVAKEDFTCHHCLIHLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01533859; iTF_00009939; iTF_01531958;
- 90% Identity
- iTF_01533859;
- 80% Identity
- -