Dmen023924.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438898.1:12892437-12893048[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-11 5.5e-08 34.0 0.0 3 38 19 54 17 61 0.87 2 2 7.4 8.4e+03 -1.8 0.0 31 37 186 192 184 197 0.73
Sequence Information
- Coding Sequence
- aTGGGGCGGGACAAAAAAGGTCGCGAGGGACGGAAAAAAGGCTGCCATACTGCTGAAATTATGAAGAAAGCCATAGACCTCCATCTTACAGGTACAAGCCTTAGGCAAGCTGCAAAACTTTATGGGCTACCATATCCGACTCTACGAAGATACgtgttaaaatataaaaatgatgaGTCAACAGAATTGGAAGCTAATTATGAGATGAGAAAAGTCTTTGACGAAGCACATGAGCTTAGCTTGAAAGACTACATAGTTGAATGTGCCGACAAATTTTATGGTCTCTCAACTAAAGAATGTCGTCGTCTCGCGTTTCAAATGGCCCAGCTAAACAACATTAAGACGCCTTCAACATGGGAGGCAAATAAAATGGCGGGTCGGGATTGGCTGCGTGGGTTCCGCAAGAGACATCGAGACATTTCACTTCGGAAGGCTGAGGCGTGTAGTCTAGCCAGGGCAACTGCATTCAACGAAAACAATGTCAAGAAATTCTTTGAGAATCTTAAAGAAGCTATGAGCCGAGCCGTCACCCCGATTTTGGAATTGGACTCCGTGTCTACAATTTGGATGAGACGTCAACTACAACGGTCCAACGTCCACCAAAAATCTTAG
- Protein Sequence
- MGRDKKGREGRKKGCHTAEIMKKAIDLHLTGTSLRQAAKLYGLPYPTLRRYVLKYKNDESTELEANYEMRKVFDEAHELSLKDYIVECADKFYGLSTKECRRLAFQMAQLNNIKTPSTWEANKMAGRDWLRGFRKRHRDISLRKAEACSLARATAFNENNVKKFFENLKEAMSRAVTPILELDSVSTIWMRRQLQRSNVHQKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447051;
- 90% Identity
- iTF_00447051;
- 80% Identity
- iTF_00447051;