Ddah041848.1
Basic Information
- Insect
- Diarsia dahlii
- Gene Symbol
- -
- Assembly
- GCA_949775195.1
- Location
- OX459218.1:9660766-9692263[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0019 0.24 13.3 0.0 1 23 516 539 516 539 0.95 2 12 0.1 13 7.9 2.7 1 21 664 684 664 685 0.94 3 12 0.014 1.7 10.6 4.8 2 23 746 767 745 767 0.95 4 12 0.75 94 5.1 0.8 1 23 779 803 779 803 0.91 5 12 0.00013 0.017 16.9 0.3 2 23 810 833 809 833 0.97 6 12 0.22 28 6.8 0.4 1 23 839 861 839 861 0.93 7 12 0.0011 0.14 14.1 2.9 1 23 867 889 867 889 0.98 8 12 0.11 15 7.7 0.6 1 19 899 917 899 920 0.92 9 12 0.49 62 5.7 0.2 1 23 998 1020 998 1020 0.95 10 12 2.1 2.6e+02 3.7 7.2 1 23 1027 1049 1027 1049 0.95 11 12 0.0014 0.18 13.7 1.8 1 23 1092 1115 1092 1115 0.95 12 12 0.0019 0.24 13.3 0.3 1 23 1122 1145 1122 1145 0.97
Sequence Information
- Coding Sequence
- ATGACGGAGGCGCAAGCACCTTTGATCCTGTACATGGATAATGCGACGGGTGAGGAGGTGTCACTCAAAATAGAACCAGATGATAATTTCCAGATGTTTCTGGATAAGGCCAGAACCCTGCTAGGTTACGAAGTAGACATAAACTCGATAACCAATAACCAACACGTCTCACTGTCAGAAAATATCTACGAATTCCTTATCAACGCTGAACAGAACCTACCTGACGACCTCACACAAAGCTTTGATCCAATGTTGGACGCCAATGATGGAGCCAACGACTTGGTCTACATCCTAGACGATGGCACTCAAATCCGGGCATCCCAAATTCATTTTGACAACGATGACCCTTTGGTAGATCTTACAGCAGAAAAAATACCTTTTGTTAAATACGCTGATGATATCACTGATGTAGATTTTGATGATATCGGTGTACATGAAACAGAAAAGATAAATATATGTGAAAGTCCCGTGTCTAGATGGTCAAGTAAAAACTCTAGTCCTAAATGTAGCTTCGTCAATTCCTTACCATTCAAACTAGTTTGCAATAATACGTCCGGCTTCGAAGCTCAGTTCACGAAATATTTAGAAGCTAATAACACGAAAACTTACGCGACTTTGAACCCTGTTACAACCAGAAATAAATCTCCTAAAAGTTTGATAAAGGACAATTTTAAGAACTATGATGATAATTATCAGAGGAACGACAATTTGTCTTACACTCGGGAGGAGATATTGAACATGTTTAAAGACTCCCCGATGACGTCATTGCCTTATGACCAGGGTTATAGCGAGAGGAGACATGTACGGAAAACTGACCCTTCTAGACTAGTTCATAAGAACTGGAGCAAGCCATTTTCCTATATCGATATGGACGGAGTTTTGATCGGAGAAAGTGAGAGCCAAATCTGTTTTATTTGCGGAAAACATGTGAATAATAACGTGGATAAATTGTATCTATTTGATAACGAAGACCAAAGGTTACACAGGTGTTCCCCGCAGAAGAAAATGTCGACTCAATTGAAAATTATCTGCGAATGCTGTCTCAACGAAAATTTCACTCCTTGTCGAATGAAAAGCGCTAACCAATTCTTAAATCCTGATGAATATCTTGTAATTAGAAATAATCAGCAATACATCttccaaaaagttaaaaacttcaATTTCACGCATTTAGGGAAACCTAAAGAGACCATAAACAAGATAGACAAAGACGAGTTTGTTAAAGTCGAAATTGGTTCTGACGGAGAAATTATCACCAAACCCATAGACAATAGATCTGATGACGTCATAATAATTAGAGATGAAAATAAAGAGGGTAGTTCGAGCGACGTAGAGATTGTGGAGCCGGAACCGGAAATAGATAATATCATAGACAATTTGGAGGAGGCTGATGAGGAGGTCAAAGAGTTTCTGGGGAAATATCAAGTTGATGATAATGAAGTTACTGAATTGAAATGCAGGTTCTGTGAACAAATATTTCCAGATCTGCCGGCTGTGGCTGATCACTGTGAGACCCACAAACATGACATGGAGGATGGCGATGTGTTTCCGTGTCCACTGTGTAATTATGgtTATGCAAATTTAAAATGGCTGAAAGCCCATGTAAAGGCAGCCCACGAGAAAACTAAAACCCAAAAAGGATTGAAAGAAGAAAATGACGCTGTGAAAGAAGAGAATaaagATGATGAAGAAACACTTGCTAAAGCATCATCACCTATCGCTACTCGCACTAGAAGTTCCAGTAAAAAAGATGATGGTGATAAAAAAGagaaTGAGAAATCAGACGAAATAAAGGCTGATTCCAATACCGAAGCTCTGCCGGAGCCAACCATCATAAAAACGGAGGTAAAGCAAGAATGTCTGGACAGCAGCGAGGATGAGATCTGGATCGTTCAGACTGCTGATGCTGAAGCTACTCAGGAGTTGGAGAATCTGCTGTGTAGTGCAAAGGTTAAAGAAAACGGGCAGGATAGTGGAACTGAGAAGACACACAAATGTTTTAATTGCAGTCAAGTATTCGCCAACTTAGAGGGCCTGTCAAACCATCGCTGTAAACGACGGAAACGGAAGTCTAAAGACCTGGGCAACCTCATTTGTATACCTACTGAAGAAGACTTCTTGAAGAGAGCTCAGGGACGCCCCCGACCGCCTGATATATCTACAGACAATGATCTTCTTGTTACGCTTCCCCGAAAGCGTCGCAACCGGGAACCGACCTCTGACCCTCAGGTGGTCACCTGCCACAACTGTAATAAGTCATTCACATCCAAAGTTAGACTCAAGTTCCATATGCAGTTCCACGAAACATCGAACCAATCCCGAACAGACGGCCGCTACTCTTGCTCGGAGTGTGACGACGTGACCTTCGCTACGGAGACGGAGCTGTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACTTTCTTCCTCAGGGCCACCCTTACGAAACACAGTCGTACGCACACAGACACACGAAGATACGTGTGTGTAACGTGTAACAAACGGTTCTTAGACAAACAGACACTGGATGAGCATGGAGTCACGCATTTACAGATCAAACCCTTCCAATGCCACATATGCCTGAAGCAGCTAACCCGTCGCTCTCGCCTGCGTATGCACATACGAGCCCACGAAGAAGAACTAACACCTCGCCTTGTGTTCGTGTGTGCCGTCTGCACGAGGGCCTTCAGAGACCATCGGCATGCACAGGAGCACGCGACAAAATCGACGGAATGCATCGAAGCGTTTGCCAACGAGTTGAAAGAAGAGGCGGAAGAGTCCGTACAGTTGTCTCCCACCAGTGGCCTTGTGAGACACGCCGTGGAGATTGTTGAATCCCCAAAACTATCAAAGCCAATAAAGCGGCAGGTATCAGCAGAGGTAGCCTCCCCACTGCTGTCTCAGTTGGCAGATGAAGCGCGCGCTATCATCAGAGTGGTCGAGATTGAGAAGGCGTTCCGATGCGAATATTGTGAAGaTGTGTTTTACTTGGAGGAACGTCTGAACGCCCACCGCGTGATACACAAGGGCGTCAAGAATCCTTTCACTTGCCACATCTGTAAAGTTAGCTTCGCTACTTACTCCAGGTGCACAACCCACAAAACAACCCACGGCTTTTACAAGCGCTCGCTAGCCGACGCTAAGAAGCAAGCCGACGGACACGCACAGCCCGACGCCGACTCGACACGCTCTGCTACTAACATACTGGGATACGGCGACTTTCCTGTTGTCAAACACTTTCTATGCGAGGACTGCGGCCGCTCATACCTGCACTGGACGTACCTACAAGTGCACAGGCGCATGAAACACGCAAATGAGAACTTTCTGTACAACTGTAACCAGTGCGAACTTACCTTTCCGAACAGTTGGGGCCTAGCGTACCATCGTAAGAAGGTGCACGGTAAGACCGGAGTCGACGACCCTGGAACAGCTAACAAGACTAACAGGGATGATTATAGGTATCCTTCATATTTTACTATTCTACATATTAAATTTCTTAACGTAACCCTCCAAATCGATTTGACTGCAGTTTTAAGTATTGACCCCACTAATCCCATAAAACGCAGAATCGACCGGAGCTGA
- Protein Sequence
- MTEAQAPLILYMDNATGEEVSLKIEPDDNFQMFLDKARTLLGYEVDINSITNNQHVSLSENIYEFLINAEQNLPDDLTQSFDPMLDANDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDITDVDFDDIGVHETEKINICESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANNTKTYATLNPVTTRNKSPKSLIKDNFKNYDDNYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKNWSKPFSYIDMDGVLIGESESQICFICGKHVNNNVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFTHLGKPKETINKIDKDEFVKVEIGSDGEIITKPIDNRSDDVIIIRDENKEGSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQVDDNEVTELKCRFCEQIFPDLPAVADHCETHKHDMEDGDVFPCPLCNYGYANLKWLKAHVKAAHEKTKTQKGLKEENDAVKEENKDDEETLAKASSPIATRTRSSSKKDDGDKKENEKSDEIKADSNTEALPEPTIIKTEVKQECLDSSEDEIWIVQTADAEATQELENLLCSAKVKENGQDSGTEKTHKCFNCSQVFANLEGLSNHRCKRRKRKSKDLGNLICIPTEEDFLKRAQGRPRPPDISTDNDLLVTLPRKRRNREPTSDPQVVTCHNCNKSFTSKVRLKFHMQFHETSNQSRTDGRYSCSECDDVTFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHIRAHEEELTPRLVFVCAVCTRAFRDHRHAQEHATKSTECIEAFANELKEEAEESVQLSPTSGLVRHAVEIVESPKLSKPIKRQVSAEVASPLLSQLADEARAIIRVVEIEKAFRCEYCEDVFYLEERLNAHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGHAQPDADSTRSATNILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYNCNQCELTFPNSWGLAYHRKKVHGKTGVDDPGTANKTNRDDYRYPSYFTILHIKFLNVTLQIDLTAVLSIDPTNPIKRRIDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534389;
- 90% Identity
- iTF_01085797;
- 80% Identity
- -