Basic Information

Insect: Diarsia dahlii
Gene Symbol: -
Assembly: GCA_949775195.1
Location: OX459204.1:4171040-4183931[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.2 1.5e+02 4.5 1.5 1 23 270 292 270 292 0.93

2 10 0.0014 0.18 13.7 7.7 1 23 299 322 299 322 0.97

3 10 1.1e-05 0.0014 20.4 2.3 1 23 353 376 353 376 0.98

4 10 0.018 2.2 10.3 0.1 2 20 418 436 418 438 0.94

5 10 0.0002 0.026 16.4 0.7 3 23 448 468 448 468 0.99

6 10 3 3.8e+02 3.2 0.1 3 23 484 505 483 505 0.92

7 10 0.00022 0.028 16.2 6.8 1 23 522 544 522 544 0.99

8 10 2.8e-05 0.0035 19.1 0.3 1 23 550 572 550 572 0.98

9 10 4.4e-06 0.00056 21.6 2.7 1 23 578 600 578 600 0.98

10 10 0.00058 0.073 14.9 2.4 1 23 606 629 606 629 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.2	1.5e+02	4.5	1.5	1	23	270	292	270	292	0.93
2	10	0.0014	0.18	13.7	7.7	1	23	299	322	299	322	0.97
3	10	1.1e-05	0.0014	20.4	2.3	1	23	353	376	353	376	0.98
4	10	0.018	2.2	10.3	0.1	2	20	418	436	418	438	0.94
5	10	0.0002	0.026	16.4	0.7	3	23	448	468	448	468	0.99
6	10	3	3.8e+02	3.2	0.1	3	23	484	505	483	505	0.92
7	10	0.00022	0.028	16.2	6.8	1	23	522	544	522	544	0.99
8	10	2.8e-05	0.0035	19.1	0.3	1	23	550	572	550	572	0.98
9	10	4.4e-06	0.00056	21.6	2.7	1	23	578	600	578	600	0.98
10	10	0.00058	0.073	14.9	2.4	1	23	606	629	606	629	0.96

Sequence Information

Coding Sequence: ATGGATGAATTAAAGTATTGCCGAGTATGTCTTGAGACTGATGCGAAAATGTTCAGCTTGGAAACAAAGTCGAGCGATTCTATCGGTGTAGTTTATTCACATTTGGCACAGATTCCGATATTTGATAGGAATCAACATGTGTGTTTTGAATGTGCCAATCTCCTCTATAAATATCATGAGTTCAAGTCAAAATGTCTCAGAGCTCATAACATTTTATCTAGAATCAGGCTTGATTCATCACAGATAACAAGACAGGCCCTCAAAAATGtagatagaaaaataaataaattggaatcTACCCTAAAAATATCTCCTGTACTTGTTGTTCATGAAGAATGTACAAATAACACAGAGACTGAATTTAATATAATTGAAGacataaaaaatacagaatTTGAAATCAATGTTAAAATTGAAGAACATtataaagaaatagaaaatatcaataacattgaaatagaaaataaatatgattataatgaaCAATACACTGAAAACTTAATTGATTCTATGGAAGAATCAGTCTCAGAAATAATAGCACAGCCAAAACACAAAAGTAAACGAAACAAAGAACCAAAAACTAAAaagaggaaagttaaaatgagcaATGGTGATAATGATTTCAGTGATGATGAACCCTTATCTAAAAGTGCTACAAAGACACTAATCACACAGCCCGGAAGAAAAAAGAATGGTTTCAACTTTAGTTACTTTGATGATTATGCAACAGTTGTGTTCATGACCCCAGAAGATGCCACAAAAGAAATGCTATTAAGAAAAGACTCCAGTAACTATAAAACATCACCATTCAAGTGTGAATTATGCTACAGAggatttgaattaaaaacaacatCCGAAAATCATGCAAAGAAACATAGCCCTGAAAACGGGGACTATGAATGTGAAATCTGCCACATCAGGTTTCCTCAACAAGTGCACTTGTGTAAACATAGACTGTCTTGTCATAAGAGAAAGTTTAGCTGTAAACTATGCTCATACATTTGTTATTGCACTGAACAAGCGAAATCTCATGTTAGTTTACATAAAGGAATGAAATATCCATGTAAACACTGCGGAGAAATATTCAGtatgtCAAACAGTCTACAGATGCATTATCGTACGAAGCATTTGAAGGAGTCTGTATGTGAAAGTGTTTGTGAGTTTTGTGGAGATATCTTTGGTACACCGAAGGGACAGTTCTTACATAGCATGAAACTGCATAGGCAGGATAAAAACGACAAGCTTGGTCCCGAGTGTAGCGACTGCGGTGTACATTTCTCAACAGAACTGGCGTGGAAGCGACACCTGGTGCTTTCTACTAAACATAAAGTCAGTAACGGTTGTAAATTCTGCGGAGACACATTCTCAAACGAGGAAGATCTTAAGACTCACTTGAGAGTGCACTCACGGCAAACCAAcagatataataaaataaaagtacccGCCGCTTGTGCTATTTGTGATAAATGGCTCCAAACCCGCGAGGAGTACAAGGCTCACGTGACGTCAGAGCACCCGCAAAGCGACGAAGCGGAGAAGTTCCTCGCTGACGGCGAGACGCCTTATGTTTGCGAAGTGTGTGGACATATGTTTAAGAGACAATGCTTCTTAAAATACCACCAACGGAAGCACACTGGCGAGCGTCCCTTCAAGTGCGTCGAGTGCAACAAAACGTTCCGGCTGGCCGGCGCGTTGACCATTCACAGCCGTATGCACAGTCGGACGAGACCGCATAAGTGCGAGATGTGTGCGCGTATGTTTACGTACAAAAGTGCGCTTAACAAGCACATGAagGTTCACTTGAACATCCGTCCCCACAAATGCGCGCTCTGCGACAAAGGCTTCATCAACCTGTGCGACTTAAAGCTTCACATCAAGTATGTACACGACAAGGTACCCTGGCCTAAGAAAAAGAACAAGAAGACCGTTCTTGAGGATGAAGACTACTAG
Protein Sequence: MDELKYCRVCLETDAKMFSLETKSSDSIGVVYSHLAQIPIFDRNQHVCFECANLLYKYHEFKSKCLRAHNILSRIRLDSSQITRQALKNVDRKINKLESTLKISPVLVVHEECTNNTETEFNIIEDIKNTEFEINVKIEEHYKEIENINNIEIENKYDYNEQYTENLIDSMEESVSEIIAQPKHKSKRNKEPKTKKRKVKMSNGDNDFSDDEPLSKSATKTLITQPGRKKNGFNFSYFDDYATVVFMTPEDATKEMLLRKDSSNYKTSPFKCELCYRGFELKTTSENHAKKHSPENGDYECEICHIRFPQQVHLCKHRLSCHKRKFSCKLCSYICYCTEQAKSHVSLHKGMKYPCKHCGEIFSMSNSLQMHYRTKHLKESVCESVCEFCGDIFGTPKGQFLHSMKLHRQDKNDKLGPECSDCGVHFSTELAWKRHLVLSTKHKVSNGCKFCGDTFSNEEDLKTHLRVHSRQTNRYNKIKVPAACAICDKWLQTREEYKAHVTSEHPQSDEAEKFLADGETPYVCEVCGHMFKRQCFLKYHQRKHTGERPFKCVECNKTFRLAGALTIHSRMHSRTRPHKCEMCARMFTYKSALNKHMKVHLNIRPHKCALCDKGFINLCDLKLHIKYVHDKVPWPKKKNKKTVLEDEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01532442;
90% Identity: iTF_01063172;
80% Identity: -