Basic Information

Insect: Diarsia dahlii
Gene Symbol: -
Assembly: GCA_949775195.1
Location: OX459218.1:845206-846834[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.17 21 7.2 0.9 2 23 180 202 179 202 0.91

2 9 0.0033 0.41 12.6 0.5 2 23 237 258 236 258 0.96

3 9 0.00011 0.014 17.2 2.0 1 21 263 283 263 284 0.94

4 9 0.0027 0.34 12.8 0.2 2 23 303 324 302 324 0.97

5 9 0.00011 0.014 17.2 0.5 1 23 331 353 331 353 0.97

6 9 3.9e-05 0.0049 18.6 4.7 1 23 359 381 359 381 0.99

7 9 0.00053 0.067 15.1 0.6 1 23 387 409 387 409 0.96

8 9 0.00051 0.065 15.1 4.5 1 23 415 437 415 437 0.99

9 9 0.00039 0.049 15.5 1.1 1 23 443 466 443 466 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.17	21	7.2	0.9	2	23	180	202	179	202	0.91
2	9	0.0033	0.41	12.6	0.5	2	23	237	258	236	258	0.96
3	9	0.00011	0.014	17.2	2.0	1	21	263	283	263	284	0.94
4	9	0.0027	0.34	12.8	0.2	2	23	303	324	302	324	0.97
5	9	0.00011	0.014	17.2	0.5	1	23	331	353	331	353	0.97
6	9	3.9e-05	0.0049	18.6	4.7	1	23	359	381	359	381	0.99
7	9	0.00053	0.067	15.1	0.6	1	23	387	409	387	409	0.96
8	9	0.00051	0.065	15.1	4.5	1	23	415	437	415	437	0.99
9	9	0.00039	0.049	15.5	1.1	1	23	443	466	443	466	0.93

Sequence Information

Coding Sequence: ATGGAGACTTTAGAAGATTTGTACTGTCGCCTCTGTGCTGATTTGAAGCCAAGCAGTGAACTCTCCAGCATGgtattaaacttagaaaaatGCAAAGAAATCACCGATATGTTGGCACGATTTAATATATTCCTGGAATTTAATAACATGTTGCCTAAAACTGTGTGTTTTGACTGTATAGAATCTTTGGAACGTTCGTATGATTTCGTTTCAACTGTGACCATCGCTCAAGAGGCATTTAAAGACTATGATATTTCGGTCCTAGATAATAAGGCAGATGTATTTGAACACAaaactatagattcaaacaccGGAAATGATGTCAGTGTTCAAAGTGATGAAACTGATGATGAATCCATTGAAAATGAACATGCCCATAATaatgaagaaaaagaaaaggaatctaaattaaaatcgaATATAGAAATAAATGAAACTGCTTTAGCTACACCACTGAAAAATTTGGTCcctagacaaaaaagaaaaccaaaaatttccaaaaatgtaGACCTAGACACATGGCCTGACTATAATTGGGTATGTGCTTTCTGTGGTATGTTTTACCATGATCCTTGCGAGTTGAAAATACATGGTATGCAGTATCATCTCACCTGTAACCCATATAGATGTTTTGACTGCAAAGCAAGAGGCCTGCACATGGATAACTTTGTAACGCACGTCTCGAAACACCGCCCCGTATTAACAAAATCTTGTTATATATGCTTTCTACAATTTGAGACTCCGAAAGAATTGAAAGCGCATAAAGCAACACATTTTAATACTGTGTTTAACTGTAATGGATGTAACACATGTTTTGAAACCAAAAAGGAATTAACTGCCCATGTAAAAAAGTTCTACAAAACCGCAGTTGACAGATCGTTAGTACCTAACAACCATGATAGTCTTAAATGTGTCATTTGTGACAAAACTGTAGGTACCAACCTTGTGTTAAACAGACACTTACGTTTACACATGGACAGAAAACGGAATTTCATTTGTGATACCTGCGGTGGCAGCTTTTATAACAAGAAAACGTTAATCAGTCACCAAAGTGTACATTCAGAGGAGAGACCTTACAAATGCGAAGTCTGTAAATTCAGTTTTAAGAAGAAACATGAACTGAAAATTCATGCTCGTAGACATTTTGGAACAAAACCGTTTGCTTGCGACCAATGTGGGAAAACTTTCCAGTTAAAATTTGAATTATCCGTTCATAGCAAAGTCCATCAAGACATAAGGCCTTATAAATGCGAGACTTGTAGCAAAGATTTCCGCTTCCGACACTTACTGGTGCAGCATAAACGTATACACACAGGATCAAAACCATATTCCTGTGAAAATTGTACGATGAAGTTTAGAAACTGGcctaattataataaacattcaAAAGACGCACATGGAATTGACAATTGTGTAAGGAAGCAAACGTCTCAAGGACTTTATGCTGTAGATCCGGAGACTAAAGAAGTTATTTATCCGGATGAGGAGAAAGTTgctgaatggaagaaaaaaatttTGGCAGACGTAAAGATAACTAGAAAGAAAAAGACGTCGGGGAATACTCAAAGCACGTCTGTTATGGTTGTTGACAGCGAGGAACCTAATAATTCTACTACTACCGACCACTAA
Protein Sequence: METLEDLYCRLCADLKPSSELSSMVLNLEKCKEITDMLARFNIFLEFNNMLPKTVCFDCIESLERSYDFVSTVTIAQEAFKDYDISVLDNKADVFEHKTIDSNTGNDVSVQSDETDDESIENEHAHNNEEKEKESKLKSNIEINETALATPLKNLVPRQKRKPKISKNVDLDTWPDYNWVCAFCGMFYHDPCELKIHGMQYHLTCNPYRCFDCKARGLHMDNFVTHVSKHRPVLTKSCYICFLQFETPKELKAHKATHFNTVFNCNGCNTCFETKKELTAHVKKFYKTAVDRSLVPNNHDSLKCVICDKTVGTNLVLNRHLRLHMDRKRNFICDTCGGSFYNKKTLISHQSVHSEERPYKCEVCKFSFKKKHELKIHARRHFGTKPFACDQCGKTFQLKFELSVHSKVHQDIRPYKCETCSKDFRFRHLLVQHKRIHTGSKPYSCENCTMKFRNWPNYNKHSKDAHGIDNCVRKQTSQGLYAVDPETKEVIYPDEEKVAEWKKKILADVKITRKKKTSGNTQSTSVMVVDSEEPNNSTTTDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00447579;
90% Identity: iTF_00447579;
80% Identity: -