Ddah039165.3
Basic Information
- Insect
- Diarsia dahlii
- Gene Symbol
- -
- Assembly
- GCA_949775195.1
- Location
- OX459215.1:14144785-14152874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0088 1.1 11.2 0.1 1 23 214 236 214 236 0.98 2 12 0.00038 0.048 15.5 3.2 1 23 242 265 242 265 0.94 3 12 1.7 2.2e+02 4.0 2.7 1 23 279 301 279 301 0.94 4 12 6.4e-05 0.0081 17.9 3.2 1 23 558 580 558 580 0.98 5 12 0.048 6 8.9 2.1 3 23 587 608 586 608 0.97 6 12 0.00016 0.02 16.7 0.8 2 23 617 638 616 638 0.94 7 12 0.00013 0.016 17.0 1.7 2 23 642 663 641 663 0.97 8 12 0.066 8.3 8.5 1.4 2 23 677 699 676 699 0.96 9 12 7.6e-06 0.00096 20.9 2.0 1 23 705 727 705 727 0.98 10 12 0.0044 0.55 12.2 3.8 2 23 734 755 734 755 0.98 11 12 0.00068 0.086 14.7 2.5 1 23 761 784 761 784 0.96 12 12 0.0051 0.64 12.0 3.0 1 23 788 811 788 811 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAGAAGAGAATTTTCCGGTGTTACCCAAGAAAACGTATTCAAAACCGTTTAAGAAGACGACAAGAGCAGCCTCGGAGTCTAATAATGTGGAAAATATGTTTAGAGTCAGGAAAAAGACCTACGAACCAGGTGTACCATTGACCACGAAAGTCGCTGTGGAATATTTGATAAACGGCAAGCTAAAGACTAGCGTCTGTCGTTACTGTCTTAAGGTAACGGAAGGATTGTCTGAACTTGACCAGATAATGCAGATAGCTGGCGCAGGAGTCATCTATAAAGTGTCAATAAGGGAAATGATAGCTTGTTTCTACCCTTTCAAGGCCATACAAGATGAAAACTTTCCTGAGAAGATATGTCAGAGATGCATAGACAGGACTCTTAGTGCTTACCTGTTCACGCAGCAGTGTGAGCAGGCTGAGAGGGCTTTACTCAACTGTTTTGATGATATCaatgaaaaatccaataaactAGACCCCGTCGACAGACCTAAAAAAAGAGGACGACAAAAACTACATCCAAATTTCAACAAGTTATACGTAGAAAATAGTAATGTAATGGATTACGCTGAACCTTTACGAAACATCATCAATTTACAAACGGAATCATTGAGCAACGAACCTAATTGGAACGAATTTGAATGTAAGAAGTGCTGGCAAGTACTTCCAGACCTAGAATCGTTGCTGAACCATGAGATAACACATCCTAAATACATGTGGTATCATTGCCGATTATGTGGCAAATCTTTTGTTAAACTTAACCAGCTAAAGAAACATTTCAACTTAGTCCATGTACGAGGAAAAGGGGTTACCGAAGAAGCAGTCAAGACTTTCAAATGTCAGGAATGTGGGAATGTAACAGAAAACTATGTACATCATCTACAACATATCGAGAAACACAAATTTAAAAGTGTAATGAAACATATAATTGAGAAGAAAACAGACCAATTGTGCTTGATTTGTCTGAAGAAGAGTACGGATTTGGTGGAGCTGGACAAAATGGTGTGCATACACGGTAATTGCCCGGAACTGGTTGGagataaaacactgaaaatggTGCTAGCTTCTACTCTACCTGATATGAACTACCTCCACAACTTCATTGGGACAAAAATATGCGAAAAGTGCCTTAACCATGCAATAACTTCATACATTTTCATACACCAGTTTAATTTCACTAGGGAAAGACTTGATTTGTGTGTTAGCCTTATGTTGGACAACCTTAGTAATATAAAACCTAATGCTAATGTTTTTGTGCAAGTTTGTCCTCCAAGCATTATGGCATCTGAAGAATTAGATGAATCTTTACTCCTAGACGAAAATGACTTTATAGATGAAAGCAAACTCAAAATAGATGTCCTAGAAGACGAGTTTAGAGTAAAATCTGACAGTGAATCAGAACCAGATAATACTATCGAAACTTCTCCAAAAAAACGGTTTGAAGTAGAATTAAATTCAGCCCCTGATGAAGAAATGTTTAGTTCTTTTTCTCCACTCCAAACTGATGTAAAATCAACAGAAATAGAGAATTTAGCTAGAAATGCAACTAAAACTTACATGAATAAAAAACTAGTGAACGGCCTACAAAATTCGAAGTACCCTGTAGACGTGTGCAGCGAATTTTTAACCTTCAACAAAAGGAAAAAGGTTGAAAAGGTTTCTTTAATGTTTACTTGTCCTTTATGTAGCAAACATTTCATTTCAGAGTATTTCTTAAAAAGGCATATTCTTAAACATGTGAACAAGAAAGTTTTGTGCAATATTTGTCTTGGTGTATTTAAATCTAAGTTCCATTTGTATGAGCATACTAAAATGACACATTTACAAAAAGAGTCTTTTTATATGACTTGCAAAGAGTGTGGTAGAAACTTTACTGATACCGATAAATTACAATCTCACGAAGAGAATCACAGAATTAAGCCTTGTCAACTTTGCAATAAGGTCTATGTTACCCAAACACATTACGAAAACCACATTCAAAGACACGCTGTCAAATTGaagattttaaaagaaaaacaaagccAAACATGCAGTTTTTGTGAGAAAGAGTGCTCGAACGACAATGAACTCTCGGTTCACGTGAATAAAGtacatttacaaataaaacCGTACAGTTGTGACATGTGTGATAGGCAATTTTATACTGAAAGTAATTTGAAGAATCATAAAAAGGTGCATAGTATGCCTTCGAAGGAAACTTGtgaattttgtaataaaactcTTTGTAGTAGAAAACAGTTAGTAATTCATGTAAGGAAACATATAGGGGCGAAACCTTTTTGTTGTCAGGTATGTGGTCAGGCGTTCTATTCAGCCTATAAAGCTAGAAAACATATGAAAATCTTCCATGGAGGCAGATTCTGCTGTAGAATTTGTAAATCTATCTTCGCAACCAAATATGATCTTAAGGATCACGTGAATAGGAATCATAATATCATTTAG
- Protein Sequence
- MDEEENFPVLPKKTYSKPFKKTTRAASESNNVENMFRVRKKTYEPGVPLTTKVAVEYLINGKLKTSVCRYCLKVTEGLSELDQIMQIAGAGVIYKVSIREMIACFYPFKAIQDENFPEKICQRCIDRTLSAYLFTQQCEQAERALLNCFDDINEKSNKLDPVDRPKKRGRQKLHPNFNKLYVENSNVMDYAEPLRNIINLQTESLSNEPNWNEFECKKCWQVLPDLESLLNHEITHPKYMWYHCRLCGKSFVKLNQLKKHFNLVHVRGKGVTEEAVKTFKCQECGNVTENYVHHLQHIEKHKFKSVMKHIIEKKTDQLCLICLKKSTDLVELDKMVCIHGNCPELVGDKTLKMVLASTLPDMNYLHNFIGTKICEKCLNHAITSYIFIHQFNFTRERLDLCVSLMLDNLSNIKPNANVFVQVCPPSIMASEELDESLLLDENDFIDESKLKIDVLEDEFRVKSDSESEPDNTIETSPKKRFEVELNSAPDEEMFSSFSPLQTDVKSTEIENLARNATKTYMNKKLVNGLQNSKYPVDVCSEFLTFNKRKKVEKVSLMFTCPLCSKHFISEYFLKRHILKHVNKKVLCNICLGVFKSKFHLYEHTKMTHLQKESFYMTCKECGRNFTDTDKLQSHEENHRIKPCQLCNKVYVTQTHYENHIQRHAVKLKILKEKQSQTCSFCEKECSNDNELSVHVNKVHLQIKPYSCDMCDRQFYTESNLKNHKKVHSMPSKETCEFCNKTLCSRKQLVIHVRKHIGAKPFCCQVCGQAFYSAYKARKHMKIFHGGRFCCRICKSIFATKYDLKDHVNRNHNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- iTF_00447581;
- 80% Identity
- -