Basic Information

Insect: Diarsia dahlii
Gene Symbol: -
Assembly: GCA_949775195.1
Location: OX459217.1:6923319-6926397[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.65 82 5.3 0.4 1 23 65 87 65 87 0.94

2 15 0.014 1.8 10.5 0.3 2 23 159 181 158 181 0.93

3 15 0.0063 0.8 11.7 4.6 1 23 186 209 186 209 0.95

4 15 0.0056 0.7 11.8 1.1 1 23 214 237 214 237 0.96

5 15 0.083 10 8.2 0.2 2 23 240 262 239 262 0.93

6 15 0.087 11 8.1 1.1 2 22 269 289 268 289 0.93

7 15 0.098 12 7.9 0.3 1 23 350 373 350 373 0.91

8 15 0.025 3.2 9.8 0.2 2 23 401 423 400 423 0.93

9 15 0.069 8.7 8.4 0.5 2 23 446 469 445 469 0.94

10 15 0.00047 0.059 15.2 0.6 3 20 476 493 474 497 0.90

11 15 0.05 6.4 8.8 0.6 1 23 502 525 502 525 0.97

12 15 9e-05 0.011 17.5 0.2 2 23 531 553 531 553 0.96

13 15 2.2e-05 0.0027 19.4 5.0 1 23 557 580 557 580 0.98

14 15 0.0016 0.2 13.5 0.9 2 23 587 608 586 608 0.96

15 15 0.12 15 7.7 1.7 1 23 614 637 614 637 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.65	82	5.3	0.4	1	23	65	87	65	87	0.94
2	15	0.014	1.8	10.5	0.3	2	23	159	181	158	181	0.93
3	15	0.0063	0.8	11.7	4.6	1	23	186	209	186	209	0.95
4	15	0.0056	0.7	11.8	1.1	1	23	214	237	214	237	0.96
5	15	0.083	10	8.2	0.2	2	23	240	262	239	262	0.93
6	15	0.087	11	8.1	1.1	2	22	269	289	268	289	0.93
7	15	0.098	12	7.9	0.3	1	23	350	373	350	373	0.91
8	15	0.025	3.2	9.8	0.2	2	23	401	423	400	423	0.93
9	15	0.069	8.7	8.4	0.5	2	23	446	469	445	469	0.94
10	15	0.00047	0.059	15.2	0.6	3	20	476	493	474	497	0.90
11	15	0.05	6.4	8.8	0.6	1	23	502	525	502	525	0.97
12	15	9e-05	0.011	17.5	0.2	2	23	531	553	531	553	0.96
13	15	2.2e-05	0.0027	19.4	5.0	1	23	557	580	557	580	0.98
14	15	0.0016	0.2	13.5	0.9	2	23	587	608	586	608	0.96
15	15	0.12	15	7.7	1.7	1	23	614	637	614	637	0.92

Sequence Information

Coding Sequence: ATGGATATGGTTAGAAAGAAAAGAGGATGCTGTGATGTCGAGTATTATAGAAAgatagctttatatagtataatgtaTGGTAAAAAACCGAAGAAATACAAGAGCACAGAGTCTTCTTCGATGAGAAGACGACGGAACCTCCAAATTCTATTCAACAATACATCAATAATACCTTTTAAATGGCGCGGGAAGTATCTCTGTTTCTATTGCAGCAAAGACATTGCCGAATATACAGAGTTAAGGGATCATACGAAAGCACATGGCAACTGTTCTATAAAAGACCATTCCTTGAAAGTCTTAAAAGGAGGAAAGAACATGGAAATAAAAGTAGACATCTCTTGTATTTCTTGCGAAGTTTGTGCAGAAATCTTACCGTCTTTCGACGAAATCATTGCTCATTTATTTGATAAACATGCTCTAGAGTACGATAAAGGAGTAGAAATGGCTATTGAAGAGTATAAACTTGCTAGTCTTAGTTGTACAGCATGCGATGAAACGTTCACATATTTCGGATACCTAGTTTCACACGTCAACAATAACCACCCCAAAAACTGTCACATGTGCGAGAATTGCAATCAGAAATTCAACAAAAAAAGAGATCTCTTTTCTCATGTTAAAAACTACCATCGAGAAGGCGGGTATAAATGCGAAATGTGCCCTCAAGTCTTCAATTCAATGaatattttaagaaaacatAGAAATAATAGGCATTTGACACGATGCAATATATGCAATTTGAAACTGCCGTCAGCTTCTATGAGACAGAAGCATATCGACTTGGAACACCCAGACGACGGGTCATTGCAATGCGATGCCTGCTTCAAGGAGTTCCATACAAAACGAGGCCTTAAGATGCATGCAAGAAAATGCAAAGGAGAAGAGATCTTCGGAATCGCGATCAAAGAAGAAAACTCTGCCATGGACATAGATTTGGACGAGAATTACGATAATCCAGTCAAAAGACCTTGCGTCAAACAACTTCGGGAAAACATAGTCACAATCATTAACATGTCTACCGCAATACCTTTTAACTTTTATAAGAATAAGTTCAACTGCTTCTACTGTTCCAAAGATTTCGGCGATTCAGATGTGATGAGAGAACACACGGTTATAGAACATCCCGTATGCGATGTTAACGAGAAATGCATTCGGAAGTGTAGGGAATCAATATCTTGCGTCAAAATCGATATTTCGTCACTCACTTGCAAAGTCTGCTTCGAGTCTTTGGCAGACTTGGACCACCTAATCGATCACTTGATCGAAAAACATGATGCGAAGTACGACAAATCGATAACTACGTGTCTCCAACCTTATAGGCTGATTAAAGACAACATGGTCTGTCCTCACTGTCCTAACGAAGTCTTCAATTTCTTTGGATCGTTACTAAAACATATCAACCTGAAACATACTAATAACAACATAATTTGCGTGTACTGCGGTCAAACATTTCGCAGAGATCAAAACTTACGAGTTCATATTTGGCGTCATCACAGAGCTGGACGGTTTAAATGCACCATCTGTAACGCTGATTGCAATATTCCGTCTCGTTTGTACATGCATATGGCTCGCGCTCACGGCGTCAGAGCTGCTAAATGCCCGAAATGTCCCGAGTCTTTTGCAACGCAATACGAAAGACAGAAACATTTAATCGTCGCCCACAACACCGGTCACAAATGCACTTATTGCGGGAAACTGTTCACTAGGAACTCTTTTATGAATAATCATATTCGGAGGACGCATATGAAAGAAAAGACTAAAGAATGTTCTGTCTGCAATGCGAAGTTCTTTAATACTGTTTTGTTGAGGAGGCATATGGTTAAGCATAGCGGGCAGAAGATTTATAGCTGTGATGTGTGTGGGGAACGGTTTCACTGGCGTAAGACTATGCAGACGCATCGAGCTAGGTTACATGATAAACCGGTTTATACTGCTCCGGACttataa
Protein Sequence: MDMVRKKRGCCDVEYYRKIALYSIMYGKKPKKYKSTESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRDHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCAEILPSFDEIIAHLFDKHALEYDKGVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNNNHPKNCHMCENCNQKFNKKRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDIDLDENYDNPVKRPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDVMREHTVIEHPVCDVNEKCIRKCRESISCVKIDISSLTCKVCFESLADLDHLIDHLIEKHDAKYDKSITTCLQPYRLIKDNMVCPHCPNEVFNFFGSLLKHINLKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICNADCNIPSRLYMHMARAHGVRAAKCPKCPESFATQYERQKHLIVAHNTGHKCTYCGKLFTRNSFMNNHIRRTHMKEKTKECSVCNAKFFNTVLLRRHMVKHSGQKIYSCDVCGERFHWRKTMQTHRARLHDKPVYTAPDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906432;
90% Identity: iTF_00447538; iTF_01062164; iTF_01064957; iTF_00712256;
80% Identity: -