Basic Information

Insect: Diarsia dahlii
Gene Symbol: -
Assembly: GCA_949775195.1
Location: OX459207.1:18833144-18843808[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00067 0.085 14.7 0.8 1 23 276 298 276 298 0.98

2 12 0.0028 0.35 12.8 1.7 2 23 306 327 305 327 0.94

3 12 0.87 1.1e+02 4.9 0.3 1 23 331 353 331 353 0.94

4 12 0.00026 0.032 16.0 2.1 1 23 358 381 358 381 0.98

5 12 0.0061 0.77 11.7 0.2 1 23 385 408 385 408 0.94

6 12 0.03 3.8 9.5 0.1 2 20 424 442 424 444 0.93

7 12 0.0011 0.13 14.1 1.8 3 23 458 479 458 479 0.98

8 12 0.088 11 8.1 0.3 2 23 499 521 499 521 0.97

9 12 7.8e-05 0.0098 17.7 0.9 1 23 532 554 532 554 0.97

10 12 1.1e-06 0.00014 23.5 1.9 1 23 560 582 560 582 0.99

11 12 2.2e-05 0.0028 19.4 0.6 1 23 588 610 588 610 0.98

12 12 6.3e-06 0.00079 21.1 0.3 1 23 616 639 616 639 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00067	0.085	14.7	0.8	1	23	276	298	276	298	0.98
2	12	0.0028	0.35	12.8	1.7	2	23	306	327	305	327	0.94
3	12	0.87	1.1e+02	4.9	0.3	1	23	331	353	331	353	0.94
4	12	0.00026	0.032	16.0	2.1	1	23	358	381	358	381	0.98
5	12	0.0061	0.77	11.7	0.2	1	23	385	408	385	408	0.94
6	12	0.03	3.8	9.5	0.1	2	20	424	442	424	444	0.93
7	12	0.0011	0.13	14.1	1.8	3	23	458	479	458	479	0.98
8	12	0.088	11	8.1	0.3	2	23	499	521	499	521	0.97
9	12	7.8e-05	0.0098	17.7	0.9	1	23	532	554	532	554	0.97
10	12	1.1e-06	0.00014	23.5	1.9	1	23	560	582	560	582	0.99
11	12	2.2e-05	0.0028	19.4	0.6	1	23	588	610	588	610	0.98
12	12	6.3e-06	0.00079	21.1	0.3	1	23	616	639	616	639	0.98

Sequence Information

Coding Sequence: ATGGAACCAGAATTCGTAAGAGTATGTCGTATTTGTTCAATAATGGACGTGAAATTACACGACTTGCGATCATACCCATTAGAATCTTATTACGAGTCTGTAATTGGAACCAATCCTGAGTATGCCAGCTTGCCACCATATGCCTGCTATGAGTGTACCGCACTTgtgaaaaagttttatttcttCAGAGAGAAATGTCTACGAAGCCAGGCAGCCCTATATGGGGCTACAGATTCTTTAGgaaaaGTAAAACCAATAAAAGTAACATTAATAGACCGCAAAGGTATTCAGATAGCGTCCAATCTCAAAATCGTCACCTTACCAAATATTGAGTTAGGTCTTCCGGAGAAATCCAAACTAAATGTAGAAGTAAAGCTTGAACCCAGGGgcagtgatgatgaagatgataagTTTAAGATTGATCATAACTATGCTTCCTTCAACTCAATGGACCCCTGTCTGtccagtgatgatgatgatgaaccactATCACTTCATAAGGAAAAGAAAGGTCTAAATAATGAATCAGACGATGGGAAGGTGAGCTTGAAAGAAGAGTGTGAGGGTCTGGaatttgcTGTAGGCACAGAAGGCTCCGTATATTCAATTGAAGTAACTAAAGTGCCTGAGAGGAAAAAGAAACGCCGGTTAAAAACTGGAACTGTTAAACGTAAAAAAGAGTTATTAAACCAAAGGGTTGCCCAAGTTGGTGATGGCAAATGGAATGATTTTGCACAGTACATCAATGTTATTACTTTGACGTTGGAAGAGCAGAAAGAAGAGATTCAGAAGAGGAAGGAGTCCTCCAACTACTTGAACTCTCCATTCCAGTGCGATCTGTGCTATAAAGGGTTCATTGACAATGATGCCTGGAATCATCATGTCAGCAAACATGCTGTGACCGCAGGAAGCATAGAGTGTCAAGTCTGTAAGTTTAGGTTTAAAACGAAGCGCGCCTATCAGAAACATGCGTCCAACCACGAGAAGAAATACGCCTGTAAATCTTGTCCTTACATATCTACCAACACGACTCAAGCAAAGCAGCATCAAGGCTGGCATAAAGGGATTACTTTCAAGTGCAAACATTGCGATGAAATATTTACTATTTGGACGTCGTACATGAGTCACGTGCGAATCAAACATCCGTCGGAGTTCATTTGCGGCTTCTGCGGGTACTCGTTCATCAGCAAACTGGGCCTCGCCATGCACAAGACTATGATGCACAAGGATATACAAGAGAAAGCAGAAGATAATCCAGAAGAAGGACCGTATTGCGAAGAGTGTGACGTCAAGTTTATATCGACGGAGGCGTACAAGAGGCACACTGTCATGTCCACCAAGCACACACAGACTACTGACTCTATTAAAGGCTGTCGGACTTGTGGCGCGACGTTCGACAACTCGGAAGAGTTGCGACTGCATCATCGCAAGGAACACACGCGGAAGAGACCCAAGAACTACGGGAAGAAACCTTCCAAACACAGCTGGCCTGCTAAATGTGAACACTGTCCGGAGGAGATACCGAACGCCCGCGAGTACTGGACACATTTCCGTCGCGCGCACCCCGACAAGAAGTACCCCATACAGAAAAACCACATCTGTGATATTTGCGGCAAAGGTTTCAGGGGCAACGCCTTCCTAATATACCACAAGCGCACGCACTTCGAAGAGCGCGCGTACAAATGTTCGCAATGCGACAAGGCGTTCTACAACCGAACGAACTTGAACGTTCACGAGAAGACGCACTCCGACAACCGGCCTTATCCTTGCTCCGTCTGCTTCAAAGCTTTCAAGGGAAAAGGAGCTTTAAATAGACATTTTAGAAGCCACACGGGTCAAAAGCCCTACGAGTGTGAAGTATGCGGCAAAGCTTTCTCTCAGTCAAACAGTAGAAAGCTGCACGTTCGGACCGTTCACCTGAAGCAACCGGCGCCCTACGTCAGTCGCAACCGGCTTGAGAGACGGAAGCAAGGCCCTAAGGACCCGCCGGCTCAACAGTTTATATACTGA
Protein Sequence: MEPEFVRVCRICSIMDVKLHDLRSYPLESYYESVIGTNPEYASLPPYACYECTALVKKFYFFREKCLRSQAALYGATDSLGKVKPIKVTLIDRKGIQIASNLKIVTLPNIELGLPEKSKLNVEVKLEPRGSDDEDDKFKIDHNYASFNSMDPCLSSDDDDEPLSLHKEKKGLNNESDDGKVSLKEECEGLEFAVGTEGSVYSIEVTKVPERKKKRRLKTGTVKRKKELLNQRVAQVGDGKWNDFAQYINVITLTLEEQKEEIQKRKESSNYLNSPFQCDLCYKGFIDNDAWNHHVSKHAVTAGSIECQVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGITFKCKHCDEIFTIWTSYMSHVRIKHPSEFICGFCGYSFISKLGLAMHKTMMHKDIQEKAEDNPEEGPYCEECDVKFISTEAYKRHTVMSTKHTQTTDSIKGCRTCGATFDNSEELRLHHRKEHTRKRPKNYGKKPSKHSWPAKCEHCPEEIPNAREYWTHFRRAHPDKKYPIQKNHICDICGKGFRGNAFLIYHKRTHFEERAYKCSQCDKAFYNRTNLNVHEKTHSDNRPYPCSVCFKAFKGKGALNRHFRSHTGQKPYECEVCGKAFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQGPKDPPAQQFIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121701;
90% Identity: iTF_01534314;
80% Identity: -