Ddah042687.1
Basic Information
- Insect
- Diarsia dahlii
- Gene Symbol
- -
- Assembly
- GCA_949775195.1
- Location
- OX459219.1:8975750-8999021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1.6 10.7 1.2 1 23 197 219 197 219 0.98 2 12 0.0018 0.23 13.3 1.6 1 23 226 249 226 249 0.94 3 12 0.29 37 6.4 1.4 1 23 253 275 253 275 0.89 4 12 0.00061 0.077 14.9 4.4 1 23 280 303 280 303 0.98 5 12 7.9e-05 0.01 17.7 2.5 1 23 307 330 307 330 0.97 6 12 0.035 4.5 9.3 0.1 3 20 351 368 350 369 0.95 7 12 0.00062 0.079 14.8 0.1 2 23 383 404 382 404 0.97 8 12 4.3e-05 0.0054 18.5 1.5 1 23 423 446 423 446 0.98 9 12 6.8e-06 0.00086 21.0 1.9 2 23 456 477 455 477 0.97 10 12 9.2e-06 0.0012 20.6 1.7 1 23 483 505 483 505 0.98 11 12 1.9e-06 0.00023 22.8 0.3 1 23 511 533 511 533 0.98 12 12 3.6e-06 0.00045 21.9 2.2 1 23 539 562 539 562 0.98
Sequence Information
- Coding Sequence
- ATGAACAACttaAAAACTGAAGACAGTAGGCCATTGCTCGCATGTTTCCTCTGCTACACTCGACTACAGCAGAGCTGCCAATTGCAGAGGAAATGTTTGGAAGCCGAGAAGCTGTTTGCTCAAATGTTGAATGGGGTATATTCGGCGAGACCAGAAAATATAAAAGGCGAATTGGACTATTTCAGCAGATATATCAAAACATCGATTCAACTGTTAAGCATAGCTGGTGATCAGACAAAAAGTCATGATGATATAAAGGAAGAACTGCCTGCGGATATTGAGGGGTTAGGTGATGATGTGGAGCTCAAAGTGGAACTTCACAATGATGACTCAGAACGGGAGAATTTAGACAATAGTTATCATGAAGTAGATATACCACTGCACCAGTTTGCATCCGACTCCGAAGATGATGTACCTTTGATGAAGCTTAAGACTGAAGTGGAGAAAGTAGAAGAAGTccctaagaagaagaaggggATTAAGAATAAAAtACGAAAACCGGATTGCAGCGAAATACTTTTAAGTAAGACAGAACAGCAAGACAATCTGCTGGCTAGATCGAAGTCTGCTAATTATTTACATTCTCCCTTCAAGTGTAGTTCCTGTTATAAAGGATTCGTGGACGCCAGAGCGTATGATAATCATAAGATGAAACATGATTTGCGCAGCGGGGCCCATGTCTGCGACATATGCCACATGCGCTACAGATCAGCGCAACTGTTACGAACGCACGCGAACAACGCACATGCGCGCATATTTAAATGCAACAAATGCGGCTATGTCTCGCATACGGGaaaccaAGCTAGGATACACGAAAAATGGCACAACGGGCATACCTATGAGTGTCAACTGTGCAGTCATACGTTCAGGAAGCCTACCTCATACTTATCTCATATGCGCAAGAGACATCCAACAGAACACGTGTGCAATATCTGCGGAGAAACGTTCGTGGGCAAACATGGGCTGCAGATGCATAAGAGGAAGACTCATGTCAACGGGGAGAAGATGGTAGACCCCAACGACCCCGCTGACCCCGCACCTGAAAGGTTCTGCGCGGAATGTAACATACAGTTTTATAACTCGGAAGCCTGGAAACGACATATACTGTGCTCCGTCAAACATACACTGAAGACTGAAGAAAGTAAAACCTGTTCAATTTGCCCGTGGAAGTACGCGGGCAACGTGTCGTTGGAGACTCATATGAAAGAACACGCGAAGGCCCTGCGCAGGTCTCGGAAACCACCCGCTACAGCCAAGGAACGGATATTTAGATGCAACCAGTGCGGCTCAAATTTCATGACGCGCTCCAAGCTGCAGGCACACATCAACAGAACGCATTTAGGACTGAAATACAACAAGAACATCGTTTGTGAAGTATGCGGCAAGAAATGCACGTCGAACGCCACCCTAAAGTACCACCAACGTACCCACACTGGGGAAAAGCCTTACCCATGCAGCAGCTGCCCGAAACACTTCGTGGACAGCAACCAACTGCGCATCCACACCCGCACTCACACCGGGGAGAAGCCGTACGTGTGTGCGGCTTGCGGGAAGAGGTTCACGCAGAAACCGGCGCTCAATAGACATTATAGAGTACACACAGGAGCGAAGCCTTACACCTGCCAATACTGTTCGCGAACATTCAGTCAGTCGAACTCACTAAAACTCCACGTAAAAACCGTACATCTTAAACAGCCCGCCAACAGTAGGAAAAATAAACCGAAAACCGTAACTCAAGAGACCAAAACCGAGAAAAATTGTGAAGAAATCGAAATTGGTACATCACTATAG
- Protein Sequence
- MNNLKTEDSRPLLACFLCYTRLQQSCQLQRKCLEAEKLFAQMLNGVYSARPENIKGELDYFSRYIKTSIQLLSIAGDQTKSHDDIKEELPADIEGLGDDVELKVELHNDDSERENLDNSYHEVDIPLHQFASDSEDDVPLMKLKTEVEKVEEVPKKKKGIKNKIRKPDCSEILLSKTEQQDNLLARSKSANYLHSPFKCSSCYKGFVDARAYDNHKMKHDLRSGAHVCDICHMRYRSAQLLRTHANNAHARIFKCNKCGYVSHTGNQARIHEKWHNGHTYECQLCSHTFRKPTSYLSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHVNGEKMVDPNDPADPAPERFCAECNIQFYNSEAWKRHILCSVKHTLKTEESKTCSICPWKYAGNVSLETHMKEHAKALRRSRKPPATAKERIFRCNQCGSNFMTRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYPCSSCPKHFVDSNQLRIHTRTHTGEKPYVCAACGKRFTQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANSRKNKPKTVTQETKTEKNCEEIEIGTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527600;
- 90% Identity
- iTF_01062119;
- 80% Identity
- -