Basic Information

Insect: Diarsia dahlii
Gene Symbol: -
Assembly: GCA_949775195.1
Location: OX459219.1:6505720-6507465[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00017 0.021 16.6 3.1 2 23 94 115 93 115 0.97

2 10 0.0012 0.15 14.0 4.3 1 23 121 143 121 143 0.95

3 10 0.00085 0.11 14.4 2.9 3 23 151 171 150 171 0.98

4 10 7.1e-07 9e-05 24.1 0.9 1 23 177 199 177 199 0.98

5 10 0.00015 0.019 16.8 2.3 1 23 205 227 205 227 0.98

6 10 0.00013 0.017 16.9 0.1 1 23 233 255 233 255 0.97

7 10 0.00023 0.029 16.2 1.0 2 23 262 283 261 283 0.97

8 10 5.2e-07 6.6e-05 24.5 1.8 1 23 289 311 289 311 0.99

9 10 1e-05 0.0013 20.4 1.9 1 23 317 339 317 339 0.99

10 10 0.00016 0.02 16.7 1.7 1 23 352 374 352 374 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00017	0.021	16.6	3.1	2	23	94	115	93	115	0.97
2	10	0.0012	0.15	14.0	4.3	1	23	121	143	121	143	0.95
3	10	0.00085	0.11	14.4	2.9	3	23	151	171	150	171	0.98
4	10	7.1e-07	9e-05	24.1	0.9	1	23	177	199	177	199	0.98
5	10	0.00015	0.019	16.8	2.3	1	23	205	227	205	227	0.98
6	10	0.00013	0.017	16.9	0.1	1	23	233	255	233	255	0.97
7	10	0.00023	0.029	16.2	1.0	2	23	262	283	261	283	0.97
8	10	5.2e-07	6.6e-05	24.5	1.8	1	23	289	311	289	311	0.99
9	10	1e-05	0.0013	20.4	1.9	1	23	317	339	317	339	0.99
10	10	0.00016	0.02	16.7	1.7	1	23	352	374	352	374	0.98

Sequence Information

Coding Sequence: ATGTCTCACAAAAATTCTGAACAAGATCGACCATCCATCATCCGATATGCACCAAAGAGAAGTAGACAAGACTCCATACCTACACCAAGGAAGAAAAGACTTTGCACTCCTCCACCAagtaagagagagagagagtcaACTCCTACTCCATTATACTGGGTTAGAGACCCAGAGAAAGGTTTAAGACCGCGGAGAGGAACTGCCCCTCGGAAGATTAAACCAAAATACTGTACACGATTTACCAAGATCTGGAGACCATACGATGAAGATAAGCGCTGGAAATGTGACATATGCttaaaaacgtttaaaaaaagatgtgaCATTGAGAGACACATGATGACACACGCAATAGAAAAACCTTTCAAATGCTCTTTCTGTAAAGAGTGTTTTAAAAAAGAGAGTTGGTTGAAAAATCATGAAAGTGCTCATAAGAATGAAAAGCCAAACGCTTGTCATCTCTGTGATTGCAGATTTATGCTGCCTATTGATTTGAGAAGGCATATCCGTACCCACACCGGTGAAACCCCTCACAAGTGTGATTTTTGTGGCATGGGATTCAAACAACCGGGAGAATTGACAAGGCATCTCAGGATTCATACTGGTGAAAAGCCTTACAGTTGTAACATTTGCTTTAGGAGTTTCAATCTAAAGTCAACTTTGACAGATCACTTTCTTACCCACAATGCAGAAAAGAAATTCAAGTGTGATGTTTGTGAGAAACGCTTTAGTAGTGCAGATGGTTTGGGATTACATGTATCTGTCCACAGcaatgaaaaaccaaataaatgcGATATGTGTGCGAAAAGTTTTAGGACGACCGAAGGCTTGAAAAGGCATTTTCTTGTTCACAGCGGTGAGAAGCGTTACAAATGTGAGACTTGCGAGAAAAGATTTAGAGATTCGCAGGATTTGAAGAAGCACGTTCGTATACATACAGGGGAAAAGCCTTTTAAATGTGAACTGTGTCCTATGGCATTTAAAGAAAGGGGCCATTTGAAACAACATATTAAAAGACATGAGAACCCAAAAAAGGGTGGTATTCCATTAGAACCTTATAAATGTAACCTTTGTGAAGAAACTTTCGTTTATAAAAAAGATTTCTCATCCCATCTTAAGTGGCATAACAGGCCAGttgaaaaaccgaaaaagtCAGTCAAACGGCCAGATAAAAAGAAAGTTAAACAGTCAGAAAAAACGTCCGTGAAACAGCCCGATGAAAAGCCAGCTAAACAGCCAGATGAAAAGCCAGGTAAAAATACAGTTAAACAGCCAGATGAAAAGTTAGTAAAAGTTAAAAAGCCAGATAAAAAACCAGATAAGAAGACAGTTAATCAGCCAGTTGAAAAACCAGTTAAAAAGCCAGTTGAAAAGCCAGTTAAAATGCCAGCTGAAAAGTCAGATAAAAAGCGAGTTAAACAGCTAGATGAAAAGCCATTTAAACAGCTAGATAAGGACACAGTTAAACAACCAGATAAAAATACAGTTATACAGGCAGATGAAAAGACAGTTAAAACACCAGATGAGAAATCAGTTAAAAAGACAGTTAAACAGCTAGAAAAGAACACAGTTAAACAACTAGATGAAAAACCGGATAAAAAGACAGTTAAAAGGCCAGATGAAAAACCAGATAAAAAGAAAGTTAAGCAGCCAGACAAAAAGACAGTTATTCAGCCAGATGTAAAGCCAGAAAAAAAGTCGTTAAGGTCAGATAGAGGCTGGAAAGGACACTACCGAATAAACGCTTAG
Protein Sequence: MSHKNSEQDRPSIIRYAPKRSRQDSIPTPRKKRLCTPPPSKRERESTPTPLYWVRDPEKGLRPRRGTAPRKIKPKYCTRFTKIWRPYDEDKRWKCDICLKTFKKRCDIERHMMTHAIEKPFKCSFCKECFKKESWLKNHESAHKNEKPNACHLCDCRFMLPIDLRRHIRTHTGETPHKCDFCGMGFKQPGELTRHLRIHTGEKPYSCNICFRSFNLKSTLTDHFLTHNAEKKFKCDVCEKRFSSADGLGLHVSVHSNEKPNKCDMCAKSFRTTEGLKRHFLVHSGEKRYKCETCEKRFRDSQDLKKHVRIHTGEKPFKCELCPMAFKERGHLKQHIKRHENPKKGGIPLEPYKCNLCEETFVYKKDFSSHLKWHNRPVEKPKKSVKRPDKKKVKQSEKTSVKQPDEKPAKQPDEKPGKNTVKQPDEKLVKVKKPDKKPDKKTVNQPVEKPVKKPVEKPVKMPAEKSDKKRVKQLDEKPFKQLDKDTVKQPDKNTVIQADEKTVKTPDEKSVKKTVKQLEKNTVKQLDEKPDKKTVKRPDEKPDKKKVKQPDKKTVIQPDVKPEKKSLRSDRGWKGHYRINA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -