Ddah029180.3
Basic Information
- Insect
- Diarsia dahlii
- Gene Symbol
- -
- Assembly
- GCA_949775195.1
- Location
- OX459206.1:21027263-21039015[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 6.3e-12 5.4e-09 37.0 0.0 4 39 139 175 136 179 0.90 2 6 1.2e-10 1e-07 32.9 0.3 2 39 191 228 190 232 0.92 3 6 7.4e-08 6.4e-05 24.0 0.1 2 31 246 275 245 277 0.93 4 6 6.2e-07 0.00053 21.0 0.1 5 31 338 364 337 365 0.94 5 6 2.1e-13 1.8e-10 41.8 0.1 5 45 370 411 369 411 0.97 6 6 5.1e-18 4.4e-15 56.5 0.1 1 43 418 461 418 463 0.95
Sequence Information
- Coding Sequence
- ATGAGAAATGAGGGTGTCCGAGTAAAGGAGTCAATATCATCAACAACACCCCGCTTAATGAAGTGTAggGGCAGTGGCTTGGAAGAGTTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCGGTGTGTGTCAAGCAGGAGCGAGCGGAGTCCCCACCAGCCACCACGCTGGAGACGCTCGAGCCAGCACCACATAATGCCAAGAGCGCGTCCTTATTGGATCGTCACATGGAATTTATGAACGTCACCGAAGTGCCTGACTCTACTGACTTCATGCCACTGCTGGCTGTGAAAGATGAACCCTCGTCCGAAGGTGAACAACCACATCTTAGCGGTGAAGACACAAGCGACTCCTGCGGCCGGCAAGCGTCGCCCGCGCTGCGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAGCGGGCTTTGGACGCTCTCAGAAACCATCAGATGAGCCTTACGaagGCATCAGCAACGTACGGCATTCCGTCCACCACGCTGTGGCAGCGCGCACACCGGCTCGGTATCGACACGCCCAAGAAGGAAGGCGCCGCCAAGTCGTGGAGCGAGGCAGACCTGCGCGGTGCTCTGCAGGCGCTGCGGGCTGGAGCCATCTCCGCTAACAAAGCTAGCAAGGCTTATGGCATTCCCAGCAGCACTCTATACAAGATAGCTCGAAGAGAGGGCATCCGACTATCGGCGCCATTCAACGCAGCGCCTACCGCCTGGCGCCGCGCAGACCTGCAGCTGGCGCTCGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTCGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTACTACAGTCTGCAGCTGGCGCTCGCGTCCATCCGCTGCGGCGTCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTATCTGCAGCTGGCGCTCGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGTAGTAAGTACTACAGTCTGCAGCTGGCGCTCGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGAACGCTGTATGGTCGGTGTAAGCGAGAAGGTATCGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCCGAAGACGCCATGGGTGAAGCACTGGAAGCAGTCAGGGTGGGGCAGATGTCCATCAACCAGGCTGCGATACATTACAACCTGCCGTATTCTTCTCTCTACGGGCGGTTCAAGAGGTGCAAGTATCAAATGCAGAGTATCTCACAAAACCAGCAGCAACCACAGCAAGATCCCCACAAGATGGAACAGGAGCAGCAACCGCACGAGCTGCAGCAGTACTACCACCAGCAACCACCGCCGCACCAGGAgccgcacacacacacatacacccaCATGCACGACTACACCCACACCCACGACCAGTACGGACAGGCCCAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MRNEGVRVKESISSTTPRLMKCRGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLEPAPHNAKSASLLDRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPALRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGSTTVCSWRSRPSAAAPARCSVPPRSMGYLQVVLQSAAGARVHPLRRQLGAACRHAVWDTYRYLQLALASIRCGASSVQRAATQYGIPTGSKYYSLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSISQNQQQPQQDPHKMEQEQQPHELQQYYHQQPPPHQEPHTHTYTHMHDYTHTHDQYGQAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -