Basic Information

Insect: Diarsia brunnea
Gene Symbol: ush
Assembly: GCA_949774965.1
Location: OX459000.1:19422980-19428253[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0085 0.81 11.3 0.2 1 20 137 156 137 158 0.94

2 9 0.0001 0.01 17.3 0.9 1 23 195 217 195 217 0.98

3 9 0.065 6.2 8.5 0.6 3 21 248 266 247 267 0.92

4 9 0.02 2 10.1 3.9 2 21 509 528 508 529 0.95

5 9 0.0082 0.78 11.3 0.2 3 20 558 575 556 577 0.91

6 9 2.1 2e+02 3.8 0.0 2 23 605 626 604 626 0.93

7 9 0.01 0.98 11.0 1.3 1 23 632 654 632 654 0.99

8 9 0.35 33 6.2 1.0 1 23 693 716 693 716 0.96

9 9 0.22 21 6.8 0.7 2 20 751 769 751 771 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0085	0.81	11.3	0.2	1	20	137	156	137	158	0.94
2	9	0.0001	0.01	17.3	0.9	1	23	195	217	195	217	0.98
3	9	0.065	6.2	8.5	0.6	3	21	248	266	247	267	0.92
4	9	0.02	2	10.1	3.9	2	21	509	528	508	529	0.95
5	9	0.0082	0.78	11.3	0.2	3	20	558	575	556	577	0.91
6	9	2.1	2e+02	3.8	0.0	2	23	605	626	604	626	0.93
7	9	0.01	0.98	11.0	1.3	1	23	632	654	632	654	0.99
8	9	0.35	33	6.2	1.0	1	23	693	716	693	716	0.96
9	9	0.22	21	6.8	0.7	2	20	751	769	751	771	0.92

Sequence Information

Coding Sequence: ATGAtcaattcaatttcatttaaaatctaCACAAAATATCTAGCATTTGTCAGCTACTTAGGTCTTCACGAAGCTTTACTTACTATATTCGgtGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACACCGAGCTCAGAGGGCGAACGGGCTGCTTCCAGCGGAGGCGTCTCGCCTGCATCGGCGGGATCGCCTGCCGCCTCGCCACCTCGCCTGCGCCTCAACACCAGTCTTGCCACAGACCCCGCGCTGGCCCCGCAGGCGACTGCACTCAAGCATGAGCCACCCTCACCATCTCCGCCACCGCCGCCTGCGCCGCAAGCTAGAGATTTTCTCGCCATAACTGCGGCCGCCTTCCCAGGGCTTTTTCCTGCGACTGGTCCACCTGGTTACATATGCAAGCCATGCGGCATTCGCTACTCGTCTCTCAGTACATTGCAAGCCCATCAAGAACATTACTGTTCGAACAGACTGCCGAAACCTGCAGAGCCGAATGCTTCGGCCGATCCAGCCGCTGATGAATCCAGCAGTGAAGCAAAGACTCCTCGCCCTGCAGGCAAGCAATATGCTTGCACTTACTGTTCGTATAGTGCCGATAAGAAAGTTAGTTTGAACCGCCACATGAGGATGCACTCTTCATCTCCGGTCAGCAGTGGAACCCCAGCGCCGACGCCAACCTCTAACGGAGAAATAACAGAAGGGCCACCAGTACAGGATCGTTACTGTGCCGATTGCGATATTCGCTTTAGCTCTATCAAAACCTATCGAGCTCATAAACAACACTACTGCAGCACAAGACAAGTTGTGAAACAAGCCTTAGCTGCGGCCCGGGGTGGTTCTGCCACGTCAGGGTCCGCGCCGCCCTCGCCTGGAGCCACGCCTCCAGCACAAGCCCAGAACCAGTACGCACTGGCGTTACCCACGAATCCCATCCTTATAGTGCCCTACTCGTTATTACGGGGTGCTAGTACTCTCCCAGGTACGACACTGCCCGACCCAGATACGCCATGTTTTCTGTTACCAAATGGAACATTCCAACCAATCAGTCGAGCACTGTCAAACATGAATGCAGAAGGAAAAGAAAATGAGGTTTTAAAATCAGCCAATCGGCCGCGAGAGTCATCAAGAGATGGTGCGACCCCTTTGGATCTCAGTGTGCGACGGTCCCCGGAATCTGTGGTGACTGATGAGCATGAGAAAGAGAACAGACTTCGGTCTACGACCCCCGAGCAGATCGTATGCGCGCCTTCGCTACCAGGTTCACCAGGAACTCCATCTCCGTCTCGACGGTCTTCTTCACCAAGTGCAGACAGTTCACCAAAGCGAAGGAGACTAAACTCTAGAGGGCCAACTCCCAAACCTCCGAGTGTACCGTCGCCTCCAGAAGAAAAATACACACCAATAATTCCACCTGCGATTCTACCTCCCGCTCTCGCATTGCGACTCGCGTCGGAACTACCAGTTACCGCGGGATCTCCCCAAGTGCTTGTGAAGCAGGGGGTGTCAAAGTGCAAAGAGTGCAACATTGTTTTCTGTAAGTACGAGAACTATCGGGTCCACAAGCGGCACTACTGCTCGGCGGGTGGTGGGGAGGAGCGCGCGAGCCCTGCGCCGCCGGAGCCCGGTCCACCACCACAGTACCGTCAGCTGATCTGTCTGGCGTGTGGAATTCACTTCAGTTCACTGGATAACCTGACGACACATCAATCTTTCTACTGCACAAAGCGGGAGACTCGGTCTCCTCGAAGCGTTCCTGAGGTTCCACGACCTGCACCAGGCTCTGAGGGTGGGTGGAAATGCCCGTGTTGTGACGTGGTGTCGCCGACAGCGGCGGCTGCGCAGCGTCACATGGACGCGCACGCCGGAGTCAAAGCGTTCCGCTGCACCATCTGCCGGTACCGGGGCAACACGCTTAGAGGCATGCGCACTCATATACGCATGCACTTCAACAACAAGAAACCGGCTGATTTACAGGAGGAAAGCTACATCGCATGCGTTCTAGAAGAGGACAGCCGTGAGGCAACATCTCCAAGCCCAGCAGTCGGCGGAGAACGCGTCCACCGCTGCAGTAGCTGCGCTTACACCTCCACATACCGAGGCAACGTCGTCAGACACGCCCGCCTGGTCCACGCCACCGATGAACCAGAAGAGGAACAAACCTCGCCTGTTCCTCCCCCAACCACAGTCGACATTAAGAAGGAACCAGACACGGAACTAGAAGAGACCCCGAACTATTGCAAGTCTTGCGATATTTCCTTCAAGTATGTCAATACTTATAAGGCACATAAGCAGTTTTATTGTACCGCCAATAATCAGGACGCGACGGCAAATAACAACGTGCCTACACCTGCGAGGGTCAGTGATACCCCTGTGCTATGA
Protein Sequence: MINSISFKIYTKYLAFVSYLGLHEALLTIFGEDEEWGNESEAMPGEPRTPSSEGERAASSGGVSPASAGSPAASPPRLRLNTSLATDPALAPQATALKHEPPSPSPPPPPAPQARDFLAITAAAFPGLFPATGPPGYICKPCGIRYSSLSTLQAHQEHYCSNRLPKPAEPNASADPAADESSSEAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEITEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQAQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNAEGKENEVLKSANRPRESSRDGATPLDLSVRRSPESVVTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSADSSPKRRRLNSRGPTPKPPSVPSPPEEKYTPIIPPAILPPALALRLASELPVTAGSPQVLVKQGVSKCKECNIVFCKYENYRVHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEVPRPAPGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCSSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPTTVDIKKEPDTELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPARVSDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -