Dbru020526.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia brunnea
Gene Symbol
RTase
Assembly
GCA_949774965.1
Location
OX459011.1:15829071-15840669[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.001 0.097 14.2 0.2 1 23 1253 1275 1253 1275 0.96
2 5 0.00068 0.065 14.7 4.6 1 23 1281 1303 1281 1303 0.99
3 5 6.8e-05 0.0065 17.9 1.3 1 23 1308 1330 1308 1330 0.98
4 5 0.00022 0.021 16.3 0.2 3 23 1338 1359 1337 1359 0.98
5 5 0.0004 0.038 15.4 1.0 2 23 1367 1389 1366 1389 0.95

Sequence Information

Coding Sequence
ATGAATAACTACGACTGCCATCGTTCCAAAAACTACTTCAATCAGAATGATGGTATAGTCGTGTATTGCAATTCATCTCTACAAGCCTCTGTCGTGGAACCACCCTACAAAGACGCGAACTGTTTGGTTGTCAATGTCGGGAAAGATCTATCACTGATTGAATATAAGCGCGGCTCAGAGGATATTATCAAGCCATGGATTACTAAAAACCTCTTGAAGTGCATACGGCGGCGTGACCTAATGCACATTAACGCCAAGAAAAAGGAAAATCGCGATAATCTTGTCATCCAACAAGAGTATAAGAAGTACCGAAACTACTGCAACAATTTATTAACGAATTTGAAACTTGATAATGACCGTAAACTTCTTATGGAAACTAAGGGCCCCATTAACCCCAATGAATGGAAAATTCCAAAAAGAGCTGCGCGTCTAGCCGAACAACGTCCACCTGAGCCAATCAAGACTTCAAACAGTTTCGGCCCCCTCCCAGGCAACCAACCATCTTCGGCTGATTCTAGCACCAGACTTCGTGATGCTGTCACCAAAAAGGCCAGCCGCATTCCTCCCATTGTCTTGGAGATACTACCCACCTGGACACATGAGTACATCAGGACCACAATGACGTCTTACTCAAAAAACTTCCACTTGCAGTACAGACGTAATAATCGAGTAGCTGTTGTCTGCCATACGTCTGAAAGCCACCAAGCCATCAAAGAAGGTCTACGTGGCAAGGACATAGCTTTTCATACATACTCAAGAAAGGATGAGAAGATGTTTAAAGCAGTAATTTTCGGTCTTCCTGACTATGTCGAGGATACACTTCCAGCTGAAATTGCCTCACTTGGTTTCGACAACGTGATCGTGCGAAAAATGAAAGTTCCTACAGAAAAGACTTCATATTGTCCTCCTTTTTTGGTCCAGTTGCCACCTGGTGCTGATTTTGTCAAATTTCGACAGATCAGGCTCCTATGCAACACCGTGGTACAGATCCGAAAGTATCGTAGCAACAATCGATACGGAACGCAGTGCTACAGATGCCAAGGTTTCGGCCACTCCTCTACGAACTGCAACTTAGCACCACGCTGCGTAAAATGTACAGATCCCCACCTGACCGAAGAATGCCCTAAAAAGACCAGGGATCAACCAGCCAAATGCTGCAACTGTGGTGGAAATCACCCTGCAAACTTCCGGCAGTGCAAAGAACGCGAAAATTACCTGAAGATACTACGGGAACGCCAGGACCAACTCAAAGCCGCCAGGACTATGAAACCACCTTTGAAGACGAACTTAGTTGATGAGCGACCCTGGAACGTGGTTGCTGCTGCTAATGCACATAAACCCTCTGTTCAAAAAAATCCTCAAGATCAAGTGACAGCTGATATGCGCGATAAGAAACCTGATGGTTGTGGTCAGGGGGTTGCTATCTTAGTAAAAACAGATATACCACATACCCTCCTAATTGCACCTCCAACCCAAAATCTGGAATGTGTCGGAATTCAATTGACGCTGTCAAACCATGAAATTGCCATTATCTCAGCCTACCAATCACCTAACCTATCATTATTAATCACAGACCTGGACGCAATTATAAACGTTCAGTCCAAAACACTTATTATGGGTGACCTTAATACCAAGCACCCCTATTGGTACTGCACTCGCTCTAATATTCATGGTGAGGTGCTTTTTGACCACATGATGCGCAACGAATATGAGATCCATGCTCCTTCTAGTCCAACTTTAGTTCACTACCATAGCACACACGTACCATCCACTCCAGACATTATCCTAGCTAATTCAATCTATCACCTTTCGGAGCCTCAAGTCATCACAAGCCTCTCCTCAAACCACCTCCCCGTCTTCTTTACCGTTAACGGTCAAGTCAACAGACACTCTCATATTTTCTATAATTACAGAAAAGCCGACTGGAAAGCCTACAGATCTTGCTTAAATGAGTCCATAACTTTGAGTCAAACTACACTCAACTCACCCGAGGCTATTGACCTTGCCGTTGAACATCTGACCCAGTCCATGATAAGTGCTAGAGACAAAGCCATTCCTAAAGTATCCAGTCGTGGGGGTCATCAACTTCCCCGACGGATCAGGTCACAAATAAAGGTTAAGAATCGTCTTCGCAAGCTGGCTTTGGAAGAGTCTAATCCATGTAATCGTCGTCAAATGTGCGCCCAGGTCAACAACATGCAAAAGTCTATTAAATCCAAGATCCAAACCCTAAACGACAATGTCTGGAACAATAAATTGTCTAAAATTACCAACCCTGCTACTGACTTATGGAGAATAGTTAAGTCAATAAACAGTCAACCTAACTCAATACCCCCTCTATCAACGTCAGCCAATACCACCACCTCCTCAGTTCTTGAGCAATGTGAGACACTAGCCAATTCCTTCCTAGACAATATGAACCTTACCAAGAATTGGGTCAGTGACCCTCGTACTGAAGAGGCAGTGAAAGAATCAATGAGCTTGCTGGACCATCTTCAGATGATTGACTGCCCAACACTTGTTAGGCCAAGCGAAATTCGAAAACTTGTAGGGaagctaaaattaaataaagcaccTGGTTTTGACGGTCTGGGGAATGGTTTACTGAAGAACCTACCTCAGAAAGCTATTGTGTTTTTGACCAAAGTGTTCAATGGGTGCCTGCGCATTGCATACTTTCCGAGGCCCTTAAAACACGCCAAAATCATTGCCGTTAAGAAACCTGGGAAAGATCAGTCCATTCCATGCAGTTATCGACCAATCAGTTTATTGCCTAGCCTTGGGAAACTACTAGAATCTCTTATCCTATCTCGCCTCTCTAAAACAACTGAGAATATTTTGATCCCTGAACAGTTTGGTTTCCGAAGTTCACACTCGACCACGCAACAGCTAGCCAGAGTTGCTGAACACGTCGCTGATGGATTAAACCGCGGCCTTTCCACAGGCATGATTTTACTTGACATtgaaaaagccttcgattcTGTTTGGCACGATGGTCTTTTACACAAGTTATTGAAATATGAAGTACCTATCTGTCTAGTTAAACTCATCCAAAGTTACTTGCGAGATCGATCTTTCTCTGTTTATATTGGTAAAGACCATTCTGCTCCCAAAACCATTCCAGCCGGTGTGCCTCAGGGTTCGCTCGTGGGTCCACCCCTTTTCATACTTTTCCTGAATGATATACCTAAACAGGCCCACACACACCTAGCCATCTATGCTGACGATACAGCCACATTCACGACAGACAACGATGTCGACATAGTTGCTGGACGGCTACAATTTTCTTTGGAACTACTCAGCCAATATTTTAAGACCTGGAAATTGAAAGTAAATTCTGAAAAAACCGAGGGAATCCTTTTTACCAGTAAACGTACACTACCCACTAGACTCGTTAAAATTGATGGCTACCAAATTGTGTGGCGCCAATCGGTAAAATATCTAGGCATAGTTTTGGATAAGACGCTTAACTGGAATAAAAACACTGAACTTACTATAAGTAAAGGTGCAAAAGCCCTTAATTCtttaaaacctattttaaaTCGAAAATCCATTCTCAGTCCCACAACTAAACTACTTATTTATTCTACATTGGTCAGACCTTGCTTAACCTACGCTGCACCTGTCTGGTCCAGTGTGGCTGAAGCAAAGTATAATAAGCCCCAAACTATCCAAAACAAAGCCTTTAAATTATCATACAACACACCATTTCGGACAAACCTTAAAGAACTACATAAACGCATAAAGAGGTCAAGGTTTCCCTGCTCGCTGTGCTCAGCGGTGTTCATAACTAAGAACAACCTGGAGTCCCATGAGAACCTGCATCGCGGCGAGCGACCCTACCGCTGTCATGTCTGTCCCTGCGCTTACACCTCTTATTCTGCACTGTTGCGCCACACCAAAAAGCACACAAATGCCCAGTTTATCTGTGACCACTGCAGTCGCTCCTTCAAGCTCAAAGCGACGCTCGTAGCTCACATGGACACGCATAAACCAATACGTAAACACGGGTGCGACGAATGTAATCGTCGGTTCGCTCAGAAGTCGGCTCTGATACTGCACGTCAACAGAGTTCATCGGAACTTGCCACCACCCTGCGCTTGTCAGATATGTCCCAAGAGATACCCCCGGATGTCTCTACTCAAAGGACACATGAAGAGAGCACATGGAATGTCGATCATTACTCGTAAAATGTTCTTCAAAACCTTACCAACAATGACAGagttagaaataaaacaatctaAAGTCATACTAAAATACGACGAAAATGAAATACTCACATTACCACCACCAGTCAAGACAGAACCTATAACAGAACAAGACTTCATCTATGACCAAGAGTATGAACAAGTCGCCAATGAAATGGACGAAACAGATTCAAAACCTACGCAAGAGATATTAATGGAGAATTTCTTACAATATGTAACACAAAACAATCAAGATACATCAGGTACTAATATAGTTTACATACAAAATGGGGACGTAGTACATAGTACGGGGACTGAGTATTTAACTAAACGTGAGAATTTGATACTAGAAGTGGAGGCTCTTGTCGATGGCCAGATTGTTGTCAAAAATATGGCGGATGATAGGAACTTAGATTTTGTGGGGAATAGTCTTTAG
Protein Sequence
MNNYDCHRSKNYFNQNDGIVVYCNSSLQASVVEPPYKDANCLVVNVGKDLSLIEYKRGSEDIIKPWITKNLLKCIRRRDLMHINAKKKENRDNLVIQQEYKKYRNYCNNLLTNLKLDNDRKLLMETKGPINPNEWKIPKRAARLAEQRPPEPIKTSNSFGPLPGNQPSSADSSTRLRDAVTKKASRIPPIVLEILPTWTHEYIRTTMTSYSKNFHLQYRRNNRVAVVCHTSESHQAIKEGLRGKDIAFHTYSRKDEKMFKAVIFGLPDYVEDTLPAEIASLGFDNVIVRKMKVPTEKTSYCPPFLVQLPPGADFVKFRQIRLLCNTVVQIRKYRSNNRYGTQCYRCQGFGHSSTNCNLAPRCVKCTDPHLTEECPKKTRDQPAKCCNCGGNHPANFRQCKERENYLKILRERQDQLKAARTMKPPLKTNLVDERPWNVVAAANAHKPSVQKNPQDQVTADMRDKKPDGCGQGVAILVKTDIPHTLLIAPPTQNLECVGIQLTLSNHEIAIISAYQSPNLSLLITDLDAIINVQSKTLIMGDLNTKHPYWYCTRSNIHGEVLFDHMMRNEYEIHAPSSPTLVHYHSTHVPSTPDIILANSIYHLSEPQVITSLSSNHLPVFFTVNGQVNRHSHIFYNYRKADWKAYRSCLNESITLSQTTLNSPEAIDLAVEHLTQSMISARDKAIPKVSSRGGHQLPRRIRSQIKVKNRLRKLALEESNPCNRRQMCAQVNNMQKSIKSKIQTLNDNVWNNKLSKITNPATDLWRIVKSINSQPNSIPPLSTSANTTTSSVLEQCETLANSFLDNMNLTKNWVSDPRTEEAVKESMSLLDHLQMIDCPTLVRPSEIRKLVGKLKLNKAPGFDGLGNGLLKNLPQKAIVFLTKVFNGCLRIAYFPRPLKHAKIIAVKKPGKDQSIPCSYRPISLLPSLGKLLESLILSRLSKTTENILIPEQFGFRSSHSTTQQLARVAEHVADGLNRGLSTGMILLDIEKAFDSVWHDGLLHKLLKYEVPICLVKLIQSYLRDRSFSVYIGKDHSAPKTIPAGVPQGSLVGPPLFILFLNDIPKQAHTHLAIYADDTATFTTDNDVDIVAGRLQFSLELLSQYFKTWKLKVNSEKTEGILFTSKRTLPTRLVKIDGYQIVWRQSVKYLGIVLDKTLNWNKNTELTISKGAKALNSLKPILNRKSILSPTTKLLIYSTLVRPCLTYAAPVWSSVAEAKYNKPQTIQNKAFKLSYNTPFRTNLKELHKRIKRSRFPCSLCSAVFITKNNLESHENLHRGERPYRCHVCPCAYTSYSALLRHTKKHTNAQFICDHCSRSFKLKATLVAHMDTHKPIRKHGCDECNRRFAQKSALILHVNRVHRNLPPPCACQICPKRYPRMSLLKGHMKRAHGMSIITRKMFFKTLPTMTELEIKQSKVILKYDENEILTLPPPVKTEPITEQDFIYDQEYEQVANEMDETDSKPTQEILMENFLQYVTQNNQDTSGTNIVYIQNGDVVHSTGTEYLTKRENLILEVEALVDGQIVVKNMADDRNLDFVGNSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-