Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459026.1:3505801-3529951[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.11 10 7.8 0.8 1 23 376 398 376 398 0.98

2 11 0.019 1.8 10.2 8.6 1 23 405 427 405 428 0.93

3 11 2.8 2.7e+02 3.3 2.2 1 23 432 454 432 454 0.96

4 11 0.098 9.4 7.9 1.7 1 23 459 482 459 482 0.97

5 11 0.004 0.38 12.3 0.2 1 23 486 509 486 509 0.94

6 11 0.028 2.7 9.6 0.1 3 21 523 541 522 546 0.93

7 11 1.3 1.2e+02 4.4 0.4 2 23 608 630 607 630 0.94

8 11 0.021 2 10.0 0.5 2 20 646 664 645 667 0.91

9 11 2.9e-05 0.0027 19.0 1.4 1 23 673 695 673 695 0.99

10 11 5e-05 0.0048 18.3 4.5 1 23 702 724 702 724 0.97

11 11 4.2e-05 0.004 18.5 1.3 1 23 730 753 730 753 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.11	10	7.8	0.8	1	23	376	398	376	398	0.98
2	11	0.019	1.8	10.2	8.6	1	23	405	427	405	428	0.93
3	11	2.8	2.7e+02	3.3	2.2	1	23	432	454	432	454	0.96
4	11	0.098	9.4	7.9	1.7	1	23	459	482	459	482	0.97
5	11	0.004	0.38	12.3	0.2	1	23	486	509	486	509	0.94
6	11	0.028	2.7	9.6	0.1	3	21	523	541	522	546	0.93
7	11	1.3	1.2e+02	4.4	0.4	2	23	608	630	607	630	0.94
8	11	0.021	2	10.0	0.5	2	20	646	664	645	667	0.91
9	11	2.9e-05	0.0027	19.0	1.4	1	23	673	695	673	695	0.99
10	11	5e-05	0.0048	18.3	4.5	1	23	702	724	702	724	0.97
11	11	4.2e-05	0.004	18.5	1.3	1	23	730	753	730	753	0.95

Sequence Information

Coding Sequence: ATGAGGTGCTGTGTGCCGAGCTGCAAGAATGATTCAAGACACATATCGAAATCACAGGGAATCACGTTCCATGTCTTCCCCAATGAATCATCACTCCGCCAGGCCTGGCTCAAGGCCCTCGACAAAGAATCGTGGGAACCGAAGGAAAGGAGTGCGGTGTGCTCCGAACATTTTCTATGTGAAGACTTGTATGAGACTAAGAGTGGGTTACGGAAGGTTAAGGCTGGAGCTGTGCCTTTCATATTACAGttTTCCTCGAACTGTGATTATGGAGAACCGGCCAGTTTGAAGGCTTGCAGGATCTGTTTAGTTATGGATGCAAAGTTGATATCAATCAGAATTTATAAGCTGGAACAGGCTTATCAGAGTCTCACAGGAATATCGCTTTGTAACGAAGATAAACTACCACAGAAGCTATGCATGGAATGTGTTCAAAGATTGCTGAACTGCAGCCGGTTCAGACATAAGTGTTTACGAGCCAACTCGCTTATGCTAGAGGTTATTAAGAAGCAGGATTGTCTAACCGTCCAGAACATTCCAACGATAAATCGCATAAACAACCAACTTACATCGACATTATCAACAACACATTTCGAACCGAACCATTACGAGTATTTCTTTGACTATAATGACGAgaatcaaacaataaaaatagataaCAAATCACCAGTACACAACATAGATAATATACAAACAGAAAACGAAATCTTTCTGACAGATGACGTTTCGGACAAAAATGACAGTTACCATGACAACGAAATTAATGATGACGGGGACATCGAAACTGGAATTACAGATGCTTTAGAAAAAGATGAAGACGTGTCGGAAAAAGACGTTTTGTCTGACAAAGATATGAATTATTCTTCAGACGATAGTTTACCTTtagaaaaatgtaaaacaaaaaaggctAAGAAAAGAAAGGAAAAGGAGAAAAAACCgttaaaaacaatcaaaaaggTTAAAAAAGTCAAAGATCCGGCTGAACCGAAAATTGATCGGCGGAAAAAACCGTTTTTAAACGATGATTTGAACGAAACTCTTTTTACGATTACTGATTTGAGTTTTGAAGAGCAAATAGCGGAGATAGTTAAGAGACAGGAGAGTGCGAATTATAAGAATTCTGTTTTTAAATGCACGGCGTGTTTTAAAGGGTTTCTAGACGAAGATGCTTATAATAGTCATATGACGAGGCATACAGATcAATGCGGCGAACACGAATGCGAAGTATGCAAAACGCATTTCAAGCACCCGCACGCGTTACGAAAGCACGTTACAGCGCACCACACACAGCGCTTCAGCTGCAAACAGTGCGCGTACATCACAACACACAGACAAACAGCGAGACTACATGAGCGGTGGCATAAGGGGACCAAGTACCAGTGTCCGCATTGCTCGGATGAGTTCGTTAAATTTACGACGTACATGGGCCATATCCGTATCAAGCACCCTTCGGATTTCGTGTGCGAATTGTGTGGCTACTCCTTTGTGAGCGCTAAAGGTATAGAACTGCACAAGAAGCTCAAGCATCGTCTGGAGAGTTCACAGATACCAGACGATGGGCCGCTATGTGAGCTATGTAACGTTCGCTTCGTGTCAGCAGAGGCTTACAAACGGCATCTCAGTGTTTCAGCTAGGCATAATACAGGTACCGACAAAAGTTCAAGAGAATCAAACAAACCTAAAAAGGGAAGGAAATCTAAAGAATCGAAGGAACTAGAACGAAGGGCGCGAGAGAAGAACAGAGAAGACAATGATAAAGAAGACACGGAGGATACGAGAAGGATATACCCCAGTCAGATGCGGAAGGCGGAGGGTCCTATACCCTGTGAACAGTGTGGTATGCAACTAGAAGACTCCCGGGCGTACCACGGTCACTTCAGACGTATGCACCCGGACAAGAACCGAACCAACTATCCCTCTATGAAGTCGCCCTGCATGTGCGAAGTTTGTGGGAGAATATTTCAGAGCTACGCCCTCTTAAAAGACCACACATGGGTCCACACGGGCGAGCGGCCGTTCAAATGTGACTCGTGCGGCAAATCGTTCCGAATGAAACAACGACTGGTCGCTCATAGACGAGTGCACAGCCAAGTGCGAGCGAGCTACGTGTGTGCGCTGTGCGGGAAACATTTCTCCACGCATAGCAACCGACAGAGGCATATGTTTATCCACACCGGCCTAAAACCGTTCAAATGTGAGATGTGTGGCAAAGGCTTCAAGCACGCGAGTGAGAAACGGGCTCACATCACTTACGTACATCTTAAGAAACCGTGGCCGAAGCGAGCTAGGGGGAAGCGGAGACCTGATACTAGACAGgGACAGCTTGGACCACAAGACCAGGACATGGACATCGAAGCCCCCATGTGGCCCCCTTGCGAGCCCAAAATGGGAGAAATGGATCCCATGATAGAAGACAAGCCAGTTTATTATAACTTGAAGATTAAtctttaa
Protein Sequence: MRCCVPSCKNDSRHISKSQGITFHVFPNESSLRQAWLKALDKESWEPKERSAVCSEHFLCEDLYETKSGLRKVKAGAVPFILQFSSNCDYGEPASLKACRICLVMDAKLISIRIYKLEQAYQSLTGISLCNEDKLPQKLCMECVQRLLNCSRFRHKCLRANSLMLEVIKKQDCLTVQNIPTINRINNQLTSTLSTTHFEPNHYEYFFDYNDENQTIKIDNKSPVHNIDNIQTENEIFLTDDVSDKNDSYHDNEINDDGDIETGITDALEKDEDVSEKDVLSDKDMNYSSDDSLPLEKCKTKKAKKRKEKEKKPLKTIKKVKKVKDPAEPKIDRRKKPFLNDDLNETLFTITDLSFEEQIAEIVKRQESANYKNSVFKCTACFKGFLDEDAYNSHMTRHTDQCGEHECEVCKTHFKHPHALRKHVTAHHTQRFSCKQCAYITTHRQTARLHERWHKGTKYQCPHCSDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLESSQIPDDGPLCELCNVRFVSAEAYKRHLSVSARHNTGTDKSSRESNKPKKGRKSKESKELERRAREKNREDNDKEDTEDTRRIYPSQMRKAEGPIPCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRIFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQGQLGPQDQDMDIEAPMWPPCEPKMGEMDPMIEDKPVYYNLKINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038854;
90% Identity: iTF_00445247;
80% Identity: iTF_00445247;