Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459012.1:17509145-17513226[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00057 0.055 14.9 1.6 1 23 297 320 297 320 0.96

2 11 0.0045 0.43 12.1 2.5 1 19 330 348 330 352 0.92

3 11 2.7e-05 0.0026 19.1 3.7 2 23 358 379 357 379 0.97

4 11 0.0039 0.38 12.3 2.5 1 23 383 406 383 406 0.93

5 11 0.12 12 7.6 0.7 1 23 409 432 409 432 0.97

6 11 0.0013 0.13 13.8 0.4 2 23 505 526 504 526 0.95

7 11 0.064 6.1 8.5 0.3 2 23 546 568 545 568 0.96

8 11 1.1e-06 0.0001 23.5 4.1 1 23 574 596 574 596 0.98

9 11 0.00059 0.056 14.9 2.5 1 23 601 623 601 623 0.98

10 11 0.0021 0.2 13.2 4.6 3 21 631 649 629 652 0.94

11 11 0.065 6.2 8.5 2.3 3 19 692 708 691 713 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00057	0.055	14.9	1.6	1	23	297	320	297	320	0.96
2	11	0.0045	0.43	12.1	2.5	1	19	330	348	330	352	0.92
3	11	2.7e-05	0.0026	19.1	3.7	2	23	358	379	357	379	0.97
4	11	0.0039	0.38	12.3	2.5	1	23	383	406	383	406	0.93
5	11	0.12	12	7.6	0.7	1	23	409	432	409	432	0.97
6	11	0.0013	0.13	13.8	0.4	2	23	505	526	504	526	0.95
7	11	0.064	6.1	8.5	0.3	2	23	546	568	545	568	0.96
8	11	1.1e-06	0.0001	23.5	4.1	1	23	574	596	574	596	0.98
9	11	0.00059	0.056	14.9	2.5	1	23	601	623	601	623	0.98
10	11	0.0021	0.2	13.2	4.6	3	21	631	649	629	652	0.94
11	11	0.065	6.2	8.5	2.3	3	19	692	708	691	713	0.94

Sequence Information

Coding Sequence: ATGGAAGGTGAAGAGAGTAACTTGGGTGTCCAAGTGCCCTACCCAATACTGTTCCTACCAAGAGTGTGTACAATGTTGGAAACAAACTGTGGGTTAtcagaaaatgtgtttttacacTTGAACATCTCATCCCCAGACACAGAAGGCAATGAGACTGTTATATACAAGGGTTTCTGTAATGTGAAGGTCATGGAAGGTATGGATATCAACATCTTGTCATGTGAATCATCAAATAGTTACTCAAGTCTTGACAACGTGCCAGTGATTCTGACTGAAGCCAACCAGATCACAATACCTGCTTACAATGACTCTCAAGTGTGGATCGACCCTACTAGGAGCCCGTTTGTGTACAACCGTTGTGACTCCCCACCTCTGGAGACTTACACCATACATGAGTCTAATGAGAACCACTTTACTATCGAACAGCATAATACATACATTACACAAAATGTGTATAATTACAATGAAGCTATTCGATACTCACCTGCGGAAGAACAAAAGACAGTCAAGAAGATACAAGAGAATGTACAAACCTCTGATGGTTATCATTTGTATGAAGAAGATGAGTTTGAGTGTGGTGTATTTCTAACTCAGTTGTCCGAAGAAATCAATGAGAAGGATGCTCGGGCAAAAGATGAGAGGAAATTTATTGGTCTTCAGACAGAAAATGGAGCATTGAAACAGCTGATGTCTACAAACATACAGTCTGTGTCGAAACAACAGAAAACGATATTGTTTTTAGGTCATGATTCTGGTTCGGGACAGACAGTGCAGAATATTGCTATCAATGATCCTTCGATGGAGTGCGTTGGAGCTGGTGAAGTAGAGAGTGAAGTAACTATTGaggaCTCTATGAGGCCCTTTACAAACAATCCACGCTCCAAAAAATACCAGTGCAACAAATGCAAACAGTTATTCGACCAACTATCTGCCTTCAAACAGCACATGGTGAGCAGCCACCGGCTCTCTGTCTCCGGTAACCTCACTTTCATGTGTTCAGACTGCGGCAAAACCTTAAAAAATCAAGAAAAGTTTGAGCAACACTGCCTCGGCCACGGCGACCCAGACCTAGAATGTAACAAGTGCCACAAAGTTTTCGCATCAAAATTCACCTTACGTAATCACCGTAAGATACATTCTCGAATGTTCTCCTGCGACTACTGCTCCAGGAGATTTTCAACAGTGCAGGAATTGCACGCACATTCAGCGAAATTTCACTTGACTTTTATGTGTGAATTATGTTCCTTTATTTGCGATTCTATGGAGGAATTGATGGCTCACAAGAAAATGGTTCATATGAAAGAGTCGAACTCTTCAAAGGCTTCCAGTGAATCTGACTTCGCTGAAGGCGTTTTTGAGGGCATCAGTGATATTTCGGTGACAGAAGAGTTAGTCAAGCAAGAAGAAGATGCACATCTTCAAACTCCTGACTCAGTGATCGCGAAGGTGATGTCTAACAAGATATTTCGAAGTCACAGCATGGCGAATAAGAAACAGAGGAAGTATAACAAGagCTGCGAAGTATGTCTAAAGAAGTTCGATCGTATCGGTGACCTCAAGAGGCATCTCATCGAACATGTAATCAGGAGCACCCTTGCCAAGAACCCAGTGAACAAGTTCGGGGTCCTCAACATCCGATGTGAAATCTGTCAggaaaaggtatttacaaagaTTGATAGATATAAAGCCCACTTGCGCGAACACGCAAAACTAACACTGTACAAATGCACCTTTTGCGACAAGTCCTTCAGTGACTCCAgcaacttttcgaagcacaaAAAGATCCATGGCTCAACCTACTTCCAATGTGACTTGTGTCAACGTAAGTTCAACTCTAAAAAAATGATTACTCAGCATATGGAGtaccacaaaaaaaatcgaCCTATCAACTGTCAATACTGCGACAAAACTTTCCATTTTGAATCGATGTTGAACAAGCATATAAGATGCTCGCATACTAAAATCACTTCAAGCAAATCTAGGTGTAGGTTCTGCCGACAATACTTCAGGAGTTTAAAGGAGAAGTGGGACCATGAATGGACAGTTCATAATGTTAGAAAGATGATTGTGGACTGTTTGGTCTGCGGATCCAGGTTTAGGAAGTATTCAGAGTTAAAGAGACATTGTACGGAGGAGCATGATACTGTCATACCTCCAGCTAAAAGATTGCTTAGATGGAAAAAGAATAGAAAGTAG
Protein Sequence: MEGEESNLGVQVPYPILFLPRVCTMLETNCGLSENVFLHLNISSPDTEGNETVIYKGFCNVKVMEGMDINILSCESSNSYSSLDNVPVILTEANQITIPAYNDSQVWIDPTRSPFVYNRCDSPPLETYTIHESNENHFTIEQHNTYITQNVYNYNEAIRYSPAEEQKTVKKIQENVQTSDGYHLYEEDEFECGVFLTQLSEEINEKDARAKDERKFIGLQTENGALKQLMSTNIQSVSKQQKTILFLGHDSGSGQTVQNIAINDPSMECVGAGEVESEVTIEDSMRPFTNNPRSKKYQCNKCKQLFDQLSAFKQHMVSSHRLSVSGNLTFMCSDCGKTLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRMFSCDYCSRRFSTVQELHAHSAKFHLTFMCELCSFICDSMEELMAHKKMVHMKESNSSKASSESDFAEGVFEGISDISVTEELVKQEEDAHLQTPDSVIAKVMSNKIFRSHSMANKKQRKYNKSCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQEKVFTKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGSTYFQCDLCQRKFNSKKMITQHMEYHKKNRPINCQYCDKTFHFESMLNKHIRCSHTKITSSKSRCRFCRQYFRSLKEKWDHEWTVHNVRKMIVDCLVCGSRFRKYSELKRHCTEEHDTVIPPAKRLLRWKKNRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810403;
90% Identity: iTF_00302460;
80% Identity: -