Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459026.1:8048643-8066656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.3 29 6.4 0.2 1 23 255 278 255 278 0.91

2 14 0.011 1 11.0 0.6 1 23 286 308 286 308 0.94

3 14 0.72 69 5.2 1.8 1 23 312 334 312 334 0.98

4 14 0.006 0.58 11.7 0.4 1 17 341 357 341 357 0.92

5 14 3 2.9e+02 3.3 0.8 1 23 378 400 378 400 0.94

6 14 0.00057 0.055 14.9 0.6 1 20 407 426 407 428 0.94

7 14 0.0058 0.56 11.8 1.0 2 21 435 454 435 455 0.92

8 14 0.0002 0.019 16.4 0.6 2 23 471 492 470 492 0.94

9 14 0.00058 0.056 14.9 0.3 1 23 497 519 497 519 0.97

10 14 0.027 2.6 9.7 4.6 1 21 528 548 528 553 0.93

11 14 3e-05 0.0029 19.0 2.3 1 23 561 584 561 584 0.93

12 14 0.0062 0.6 11.7 0.4 1 23 590 613 590 613 0.94

13 14 0.021 2 10.0 0.3 3 19 626 642 624 643 0.89

14 14 0.044 4.2 9.0 0.9 1 23 656 679 656 679 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.3	29	6.4	0.2	1	23	255	278	255	278	0.91
2	14	0.011	1	11.0	0.6	1	23	286	308	286	308	0.94
3	14	0.72	69	5.2	1.8	1	23	312	334	312	334	0.98
4	14	0.006	0.58	11.7	0.4	1	17	341	357	341	357	0.92
5	14	3	2.9e+02	3.3	0.8	1	23	378	400	378	400	0.94
6	14	0.00057	0.055	14.9	0.6	1	20	407	426	407	428	0.94
7	14	0.0058	0.56	11.8	1.0	2	21	435	454	435	455	0.92
8	14	0.0002	0.019	16.4	0.6	2	23	471	492	470	492	0.94
9	14	0.00058	0.056	14.9	0.3	1	23	497	519	497	519	0.97
10	14	0.027	2.6	9.7	4.6	1	21	528	548	528	553	0.93
11	14	3e-05	0.0029	19.0	2.3	1	23	561	584	561	584	0.93
12	14	0.0062	0.6	11.7	0.4	1	23	590	613	590	613	0.94
13	14	0.021	2	10.0	0.3	3	19	626	642	624	643	0.89
14	14	0.044	4.2	9.0	0.9	1	23	656	679	656	679	0.97

Sequence Information

Coding Sequence: ATGAAGGAAGTTAACATAAATATAGAAGGATATAACGTTAACGGAATATGTGTTGGCTGCTTGAATTACAATCGTCGTATGTTTTACGATCCTACCGTGAAAGAAATTTTTCGTTTGCTCGGAAATATTGATGTGCCAGATGGATTAGAAGTGCAGGTCTGTTGGGAATGTTTGGCGCGAGTGAAATCTGCTATCAATTTTAAGGAGCAAATACTTAAGTCTTATGACTTTCTTATCTCATACTCAAAGGAGCACACATTCCTGGACTCTCCAACGGACTTCGAGCCTTACGCCACTCTCACCTTCGACAGGACAGAGATAGAGTTGTACGACTGTCAGCCAGACACACAAGAAACTTTGAAAGATGAGGAGAGAGAACTCGTTGTCAAAGCGGAAGAAGGCAGTGAGAAGTATGCTTTCGATGTGCCAGTAAAAGAAGAAACGTTTGAAGATCCATACTTCCAAGATATACCAGCTCTAGACGACAATGTCACCTCAGATGAAGATGTCCAGCTGTCTAAACTGAAAGAGACGGAGAAGGTTAAGAAGAAACGGAAGAGCGAGAAGAAGAAGGATAGGGAAAGAGATATGATCGACTCCCCAAAACGCCAGAAAACAAAGAAGGACAAAAACCCCGCGAAGAAGAGTAGGAAGCTAAAGAACCTTCCAGAAGATTTGGTGGAACTGTACACTATGAGTAAAGTAGATATGTGGGCGATCAGGGTCGAGGACCTGAATAGCAAGGAGTTTCAGAAGCTCAAGTATAGATGTGACGATTGCATTATCGCATTCAACACAGAAAAGTTAATGAATGATCATCTGTATGGAAAACACGTGCCaAAAAGCGACGACTGTCACCAGTGCCCAATATGCCAAGCCTTCTTTCTAACGAAGGATAATCTTTCCTCTCACGAGGCATTGCACCTACAAGGGTACAGATGTAAGCAGTGTGCGTTCAGTACGATCCTCAAGCGACGTATGATGAAGCATATGGGCACTCATGCGCCTACGGGAGACGCGCATGTGTGTCCTACTTGTGGGACTACGTttagTACCACCCACTCACTCACTCCCACACACTTCCTCACAAAAGACAATGTATCCTCTCACAAGGCATTGCACCTACAAGGGTACAGATGTAAGCAGTGTGCGTTCAGTACGATCCTCAAGCGACGTATGATGAAGCATGTGGCGATTCATGCGCCTGCTGGTGACGTGCACGTATGTCCCACTTGTGAGACTACGTTTAGTACAAAATCGAGGCTTACATACCACCGTGGTGTCTGTCGACAAGAACGACCTCAGTGTGACTGTTGCGGAAAAGTATTTGCCAATAAAATGACGCTAAAGTATCATCTCAAAATCCTGCCACAGAACAAAGACGAGAAGCCTAAAGAGAAATTGTACATACCGTGCAAGGGCTGCGATAAAGTGTTCCACTCTAAGAAGAGCTACAGAGCGCATGTTGTAATCCATGACGGCCTAACCTATCCCTGTCCTATCTGCGGCAAGCTGTTCCAGTGGAAACGTAACCTTGCCAGACACTCCCGCAACCATCGCGAGAGAGAAGAGGGCAACCTGCACGAGTGTAGGGCTTGCAGCAAGACTTTCGCTAGCAGAGACTGCTATAACAACCATATGCGGCTTAGTAAGCGGCATGTGTCGCAGGATACTTATCAACACGAATGTAACTACTGCGGCAAGAAATTCGCAACAAAATGGTGTCTGACGGACCACATCGACTGGGACCATTTGAAGAGAATCAAGTACCAATGCAGTTTCTGTTTCAAGGCGTTCAAAACAGCTAAGATATTGGTAGCTCATGTCAACAATATACACGAGGGTAAGAAAAAAGAAGCCGAGGGTGAACATCTTTGTGAAATATGCGGGAAATCGTACAGGACAGTAAAACGTCTCAAAGGCCACGTGTGGGCGATGCACACGAAACGTTCCCACAGTAAAGTCTACAAGTGCAAACTATGTCCCGCGACCTTCATGTGGCAAACTAGCATTTACAAACATATGAAGATGATGCACGACAGCAATAAGAAGACAAAGTCACCACGTGCCGTCGCTCCTGTGAAGAAGGAAGAGCCCTACCCGGGTATCGAACTAGCGAACCGCATGCAGTATTTCCAACAGAACATCAGTAGCAACTTAAACATAGTTCACATACAACCTTTAGGAATTGCtcaaaatattgtataa
Protein Sequence: MKEVNINIEGYNVNGICVGCLNYNRRMFYDPTVKEIFRLLGNIDVPDGLEVQVCWECLARVKSAINFKEQILKSYDFLISYSKEHTFLDSPTDFEPYATLTFDRTEIELYDCQPDTQETLKDEERELVVKAEEGSEKYAFDVPVKEETFEDPYFQDIPALDDNVTSDEDVQLSKLKETEKVKKKRKSEKKKDRERDMIDSPKRQKTKKDKNPAKKSRKLKNLPEDLVELYTMSKVDMWAIRVEDLNSKEFQKLKYRCDDCIIAFNTEKLMNDHLYGKHVPKSDDCHQCPICQAFFLTKDNLSSHEALHLQGYRCKQCAFSTILKRRMMKHMGTHAPTGDAHVCPTCGTTFSTTHSLTPTHFLTKDNVSSHKALHLQGYRCKQCAFSTILKRRMMKHVAIHAPAGDVHVCPTCETTFSTKSRLTYHRGVCRQERPQCDCCGKVFANKMTLKYHLKILPQNKDEKPKEKLYIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHREREEGNLHECRACSKTFASRDCYNNHMRLSKRHVSQDTYQHECNYCGKKFATKWCLTDHIDWDHLKRIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSHSKVYKCKLCPATFMWQTSIYKHMKMMHDSNKKTKSPRAVAPVKKEEPYPGIELANRMQYFQQNISSNLNIVHIQPLGIAQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01063169;
90% Identity: -
80% Identity: -