Dbru032716.1
Basic Information
- Insect
- Diarsia brunnea
- Gene Symbol
- -
- Assembly
- GCA_949774965.1
- Location
- OX459026.1:5659843-5683452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.13 13 7.5 1.2 1 23 299 321 299 321 0.98 2 10 0.29 28 6.4 0.3 1 23 328 350 328 350 0.94 3 10 5.3 5.1e+02 2.5 0.3 1 19 354 371 354 374 0.85 4 10 4.8e-05 0.0046 18.3 1.4 2 23 383 405 383 405 0.96 5 10 2.2e-06 0.00021 22.5 0.1 1 23 414 436 414 436 0.98 6 10 0.00034 0.033 15.7 1.1 1 23 441 463 441 463 0.98 7 10 0.0049 0.47 12.0 1.6 1 21 472 492 472 497 0.93 8 10 1.2e-05 0.0012 20.2 0.7 1 23 502 525 502 525 0.97 9 10 0.00024 0.023 16.1 0.9 1 23 531 553 531 553 0.97 10 10 2.6e-05 0.0025 19.1 0.8 2 21 563 582 563 583 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCATTTCTATGTTTTATTTGCCACAACACCGTAAACTCAGATACGAATGAGGAGACACGGGACAAATACAGAGAAATCGTCGGCATGAATCTCTGTCCTGACTCACAACTATGTTATATATGTTGCCATATGCTAAATAAGTTGTGGCTATTTAAATCTATATGTTTGAAAAGAAGTTTGGAGTATCCTGTACTGTTTAGCGAAAAGGGCACAATAAACTTGCAACACAAGGAAACGGAAATAATCATCATATGTTCAGAAGAAAATTGTCTACCGAGTTCCTTATCACAGCTATTTGTTGATAACAGAGACCACAGTATTAATAGCAATGATTACACCAAACTAGACGAAAGTCAccatgattttgatgattatttccATGATACTATGACTAAGAATGCTGTAGAAACGGAAATTATAAGGCATGAAGAGTTTGGTAACTCTGATAAGCAGTTTGTGAACATTGATGAACAGTTTATGAATTGTAATGTTCAGTTTGTGAATAGTGATGAGGAGTTTGTGCATAATGATGAAGAAGAGGTGaataatgatgaaaatattgaaaatgatgTTGTTCGTTCTAATAATGAAAACATACTTgattatgaattaaataaagatgAAGAAGATGGTAATTTGGAATTTAAAGTACAGAGTGGagaagaagaaataaattatgaatactATGAAGAAGAACGACAAAAATGTTTAGATGAAATAAGAAATGAATGTGGGAATGAAGAAACTGCTGCAGAATTTGATGAGACGACaaagaaaaaatctaaaaagagtAAAAAGAAAGACTTTGAGAAGATTGTTCTGTCAATAGAAGAACAGAAAGTGGAATTAGAAGCGCAGAGGAAGAGTAAGAAGTATATGGAAGCCGAGTTCAAATGCTATAATTGTGCTTTGGGGTTTCTGTTCAAAGATACTTACCAGGCTCATATGATGAGACATGAAGAGTCAAACGGCGAACACGTGTGCACGCTCTGCTCGCTTCGCTTCGCTTCGGGAGCGGTGCTTCGCTCGCACGCTCTTCAACACGGCGCTCGATATCGATGCTCGCGTTGTTCTCAAGTTGTTCGAGCTCGGCAAACGCAACGGCATGTCACCTACTGTCGAAAGAAGCCGCCATCGAATTCTTGTCATGAGTGCCAGAGGGTGTTTCAGGACGCCAGCGGCTTACGACAGCATCTGAAAAGGGTCCACATGAGCAAGACTAGCAATAGAACATATTCGTGCAGCGTTTGCGGCAAGAGTTATAGCAACCAAGCCGCTGTGAGGACTCATATGATTGTTCACATTCACCGGAAATTCAGCTGCGACCAGTGCCCTTCCATCTTCAGCAGTCCCTACAGCCTTAGCCAGCACAAGAAGAAACACTCCACGCCAGAGCAGGTCTCCGAACATTACTGCTCTACTTGCGGCGTGGGCTACTCTAGTAGGAAGAGCTTGTTGGCGCACCACAGACAATCTGCCTCCCATCAGCAGAGAACATACGACTGCCCGATTTGCAACAAATCATGCCCGAACGAGCGGTCGCTGACCTCCCACATATCCACCGTGCATTCTGCGAGCAAACCGTTCAGCTGTGCGACTTGCGACGCCCGCTACAGCAGTCGCAAGTCGCTAACGAGGCATGAACGGGGCCATATCGGTCCACCGAAGATTAAACTAGCTGTGTGCCATCTATGTGGAAGGAGTTTTAAGggcAAGGGTAAACTCAACAGGCATTTACGAGAAGTCTGCGAAAAAGCGAAACTTGAAGAAGAATTGGCATCTTATTATGAAAAACAAGTTATATTAGGGTGCTAA
- Protein Sequence
- MSSFLCFICHNTVNSDTNEETRDKYREIVGMNLCPDSQLCYICCHMLNKLWLFKSICLKRSLEYPVLFSEKGTINLQHKETEIIIICSEENCLPSSLSQLFVDNRDHSINSNDYTKLDESHHDFDDYFHDTMTKNAVETEIIRHEEFGNSDKQFVNIDEQFMNCNVQFVNSDEEFVHNDEEEVNNDENIENDVVRSNNENILDYELNKDEEDGNLEFKVQSGEEEINYEYYEEERQKCLDEIRNECGNEETAAEFDETTKKKSKKSKKKDFEKIVLSIEEQKVELEAQRKSKKYMEAEFKCYNCALGFLFKDTYQAHMMRHEESNGEHVCTLCSLRFASGAVLRSHALQHGARYRCSRCSQVVRARQTQRHVTYCRKKPPSNSCHECQRVFQDASGLRQHLKRVHMSKTSNRTYSCSVCGKSYSNQAAVRTHMIVHIHRKFSCDQCPSIFSSPYSLSQHKKKHSTPEQVSEHYCSTCGVGYSSRKSLLAHHRQSASHQQRTYDCPICNKSCPNERSLTSHISTVHSASKPFSCATCDARYSSRKSLTRHERGHIGPPKIKLAVCHLCGRSFKGKGKLNRHLREVCEKAKLEEELASYYEKQVILGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064128;
- 90% Identity
- iTF_00446507;
- 80% Identity
- -