Basic Information

Insect: Diarsia brunnea
Gene Symbol: Hivep3
Assembly: GCA_949774965.1
Location: OX459026.1:4256799-4267349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.9 9.5e+02 1.6 0.1 1 8 61 68 61 80 0.76

2 12 1.6 1.5e+02 4.1 0.3 1 23 199 222 199 222 0.90

3 12 0.024 2.3 9.8 2.9 1 23 229 251 229 251 0.98

4 12 1 99 4.7 1.6 2 23 256 278 255 278 0.84

5 12 0.002 0.19 13.2 3.9 1 23 289 311 289 311 0.97

6 12 2.3e-05 0.0023 19.3 0.2 2 23 316 338 315 338 0.96

7 12 2.2e-05 0.0021 19.4 0.4 1 23 345 368 345 368 0.98

8 12 0.57 55 5.5 4.4 3 22 377 396 376 400 0.92

9 12 1e-06 0.0001 23.6 0.1 1 23 408 431 408 431 0.95

10 12 0.00018 0.018 16.5 3.4 1 23 437 460 437 460 0.93

11 12 8.7e-06 0.00083 20.7 0.4 3 23 471 491 470 491 0.98

12 12 0.022 2.1 10.0 2.9 2 23 498 520 497 520 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.9	9.5e+02	1.6	0.1	1	8	61	68	61	80	0.76
2	12	1.6	1.5e+02	4.1	0.3	1	23	199	222	199	222	0.90
3	12	0.024	2.3	9.8	2.9	1	23	229	251	229	251	0.98
4	12	1	99	4.7	1.6	2	23	256	278	255	278	0.84
5	12	0.002	0.19	13.2	3.9	1	23	289	311	289	311	0.97
6	12	2.3e-05	0.0023	19.3	0.2	2	23	316	338	315	338	0.96
7	12	2.2e-05	0.0021	19.4	0.4	1	23	345	368	345	368	0.98
8	12	0.57	55	5.5	4.4	3	22	377	396	376	400	0.92
9	12	1e-06	0.0001	23.6	0.1	1	23	408	431	408	431	0.95
10	12	0.00018	0.018	16.5	3.4	1	23	437	460	437	460	0.93
11	12	8.7e-06	0.00083	20.7	0.4	3	23	471	491	470	491	0.98
12	12	0.022	2.1	10.0	2.9	2	23	498	520	497	520	0.92

Sequence Information

Coding Sequence: atgacgtCGTTTTTGCATTTAAACGTACAAGATTATGTTTTTGAACCAAATATCACTGACCTAAACAAAGTTTGCATATGCTGCACATCCCAAAAtgctgttttaataaatatttgttcttgTAACCATACTGCATTTTTGGAGAATTATATAAAATCTGGGATCGACTTGAAAAATACCTACATCTGCAATATTTGCCATAATATGCTGAAAAAGATAGAAGTGTTCAAGAGACAAGTTGAAGAAAGCGTAGCATTGCTTCTAAATCAGGTACCAATCTTAAAAATAACCAAACTACACAACCTGCACCGCTCACCCATAGCAATTGACGGCGTGACCAAGTCGGAAACGGAAATAGACGTGAAGCCGGAACCATCTGATTCAGAATGTTTAGAGGTCGAGACCGATGTCAAAGTGGAGCATGACTCCTCTGACAATGAAACTGAACCGCTGGCGGTGTTGAAGAGGAAGAAACGGAAGACGAGGAATGAGCTGAGgtaCGAAGGGAAGATAGGCATCGTAATACTTACAGAGAAAGAACTACAAGAAGAAAGAGAACGAATGGCTAATAGTGAAGGTTACCTAAAGCTGCCATATAAATGTGAAGACTGTATTGTAGGGTTCGACCACGACTTGACGCTGATCAGCCATATTGGGAAGAGGCATACGAAGaTAAAAAATGGTTTCCAGTGCAGTGTTTGCAAATCTGTATTGAGCACAAAATTTTCTTACAACGAACACAAGAAAAGACACGTTAGAAGAATGGAGTGTATGATCTGCCACAAGAGGTACAACCACATGCAGTCAGCCGCGCAGCACTATGATGAACAACATGCAGCCGCTGGTGAGGGCATACAACAAGGACACACCTGCAAGGAGTGTGGGTTCACTACCACTTCAAACCGTGCATATCGGTACCATATGGACAAACACAAGCAGAAGCAAAGTTGTAACATTTGCGGAAATACTTTCGTCAACAGTAACGGACTTAAGGTTCATATGTAtACAGTTCACAAGCAATCCTCACGCGTCTACAAATGCGACCAATGCAACAAGTCATACCGTGCGCGTTCGGGACTGGAGTCGCATGCGCGTTCCGCACACGGCGGCGCAGATGCGCGTGCGTTCTGTGTGCAATGTAAGACCCACTACAGGAGCAAGCACGGATTGGCGCATCACCTCGCCACAAGCTCTAAGCATGTTACTGACAGTGATAAGAGATTCATCTGCGACGAATGTGGTGCGAAGTTCGTGACGAAGAGCAACCTGCAAGTGCATATCAACTGGGAGCATTTCAAGATCAACACACATCGGTGTACGAAGTGTACTAAGATTTTCAAAAGTCGTAACGCGCTCAATCGTCATGTGACCTACGTGCACAACAAGAAGAGACCGCCTCGCAATAAGATATGCGACTACTGTGGCCGAGCTTTCACTaCTCAAACAATCTTGCAGTCTCACATACGGACACATACAGGAGAAAGACCGCTACACTGCAGCCATTGTCCCGCCACCTTCGCGCATTCAGCCGCTTTATACACCCATAATAAATTGCTACATACCcccaaatga
Protein Sequence: MTSFLHLNVQDYVFEPNITDLNKVCICCTSQNAVLINICSCNHTAFLENYIKSGIDLKNTYICNICHNMLKKIEVFKRQVEESVALLLNQVPILKITKLHNLHRSPIAIDGVTKSETEIDVKPEPSDSECLEVETDVKVEHDSSDNETEPLAVLKRKKRKTRNELRYEGKIGIVILTEKELQEERERMANSEGYLKLPYKCEDCIVGFDHDLTLISHIGKRHTKIKNGFQCSVCKSVLSTKFSYNEHKKRHVRRMECMICHKRYNHMQSAAQHYDEQHAAAGEGIQQGHTCKECGFTTTSNRAYRYHMDKHKQKQSCNICGNTFVNSNGLKVHMYTVHKQSSRVYKCDQCNKSYRARSGLESHARSAHGGADARAFCVQCKTHYRSKHGLAHHLATSSKHVTDSDKRFICDECGAKFVTKSNLQVHINWEHFKINTHRCTKCTKIFKSRNALNRHVTYVHNKKRPPRNKICDYCGRAFTTQTILQSHIRTHTGERPLHCSHCPATFAHSAALYTHNKLLHTPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01118631;
90% Identity: iTF_01063106;
80% Identity: -