Dbru031841.1
Basic Information
- Insect
- Diarsia brunnea
- Gene Symbol
- -
- Assembly
- GCA_949774965.1
- Location
- OX459025.1:4783665-4787364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.017 1.6 10.3 0.8 1 23 88 111 88 111 0.96 2 17 0.034 3.3 9.4 0.1 2 23 140 162 139 162 0.96 3 17 6.8 6.5e+02 2.1 4.0 2 23 185 206 184 206 0.96 4 17 0.0036 0.35 12.4 0.3 1 23 210 232 210 232 0.98 5 17 0.24 23 6.7 0.8 1 21 237 257 237 260 0.88 6 17 0.86 82 5.0 1.8 2 19 268 285 267 290 0.79 7 17 0.027 2.6 9.7 4.0 2 23 298 320 297 320 0.96 8 17 0.02 1.9 10.1 3.2 1 22 389 410 389 412 0.90 9 17 0.13 12 7.6 0.1 2 23 442 464 441 464 0.95 10 17 0.36 34 6.1 4.9 2 23 487 508 486 508 0.97 11 17 0.00055 0.053 15.0 0.2 1 23 512 534 512 534 0.97 12 17 0.058 5.6 8.6 2.0 1 23 539 562 539 562 0.92 13 17 0.043 4.1 9.0 0.9 2 23 570 592 569 592 0.93 14 17 0.00041 0.039 15.4 0.9 2 23 600 622 599 622 0.96 15 17 0.0012 0.12 13.9 2.1 1 23 628 650 628 650 0.95 16 17 1.8e-06 0.00017 22.8 1.9 1 23 656 678 656 678 0.96 17 17 9.7e-06 0.00093 20.5 3.6 1 23 683 706 683 706 0.97
Sequence Information
- Coding Sequence
- ATGTTTGCTATAAGTGTCATTTGCACTAAAAGAACTCAATTCAATAGTCGACTTAGTGTAGGTACTGGAACTAAAGCTACTGAAGTTCCGAAAGCAAATATTGAAGAAAAACCGAAACGGAAGAGAATAAAAGGAGTTCTCACTGAAATCGGTAAAGCGAGGATAGCAATGTACGAGGAACTGAAGAAACACCGCTCAAATCTTCAAGAAATTCTTACTTACTCCAATGCAACGCCTTTTCTTGGAATAAATTACCGAGGTTATATGTGTTGCTACTGTGATACACAGAATCCAGACCCTGCTGATCTGAAGAAGCATATTCGTGACAATCATCGGCGCTTGTACAATGCTGTTACTCCAATTGAAAAGATTACCAGAAAATATGAGTTTTGTGTCAAACTGGACTTAACGGATTTACGATGCACACTCTGCGACACTGACATAGATACTTTGGAAAACTTGTTAATTCATCTAAAGAGTGAACACGAAAGGGAAATACACATGGACATTAAAAACCAATTCTTACCATTTAAGTTCAATGGTGAAGTCTTAAAATGTTGTCTGTGCCCAAGTGTTtttgaaaagtttaaaattttgcAATTGCATATGCACACTCACTATAGAAATTTTATTTGCGAAGTGTGTGATATGGGTTATATTACCGGCGGTTGTCTCAAAAGACACGCCCAGACACACATAAAAGGGGAGTTTAAATGTAGCTACTGCTCCAATACCTATGACACTCTTAGGAAGGTAAAAAGTCACGAAGCTGCCGTTCACGTCCACAAATATCTGAGAAATAAGTGTGGGTTCTGCAAGAAGATGTTTAAAAATCATCAGAAGAGGGATGACCATGTAGCGGAAGTGCATGGGGTGCAAAGTAACCTGATTAAGTGTCGTGCTTGCGATAAGACTTTTACTTGCAAAAGATCTCTGACAATTCATACTAGGAGGGATCACTTGATTGAGCGTAAGCACAAATGTATCATCAAATTAAAGAATGAACCTGAACCAAAACCAAATAAACCAACAGCCAAGCCAAAGCTGCCCGCTGGTAAAACAAAACCGGCTGTAAGAGAGGAACTCGAAAAGCAATCGAATAACACCCAAATGATTATAATGTTCAGCAATGCGACCCCTTTCCTACAAAAGATAGACACGGGGTACGTCTGTTGCTACTGCAGGGAACAATTTCAGAATCCTGCCGATCTAAAGAAGCATAATCATGAAATTCATGGCGACAAGTATGACCCAGTATCTCCAAACGTTATTATGAACAGCAGGAAATCTGAATTCTGCGTCAAATTAGACATTACAGGCTTACAATGTAAACTCTGCAACACAGACATTCCGTCTTTAGAGGCACTTAAAGATCATCTCCAAAATGAGCACAAGAAAAAGATATTTACGGATATCAAGAATAAGATCATACCATTCAAGTTCGAAACTGAAGATATTCGTTGCTGCATTTGTTCCAACGTATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATTCACATTACAGGAATTTTGTTTGCGAGCAGTGCGATCTAGGTTTTGTGACCCTTACAAGTCTAAAAAGTCATGCAGAAAAACACAAATTAGGCGAATTCAAATGTCAATATTGCCCCAAAATATATGATACGTATCGTAAGAAGAAATCCCACGAAAAAGCGGTGCATATAACAGGATATTTGCTGAGCAGATGCGGGTACTGTAACGAACGGTTCACAAGTACCAAAAACAAGGATGAGCATCTAGCCAAAGTACACGGCGTTCAGTTACGTACACTCAAGTGCCAAGCATGTGAAAGAACTTTCGAGAATAAAAGAGCTTTGACAATACATACGAGAAGGGATCACTTGATGGAAAGAAAACACAAATGCTCCCAATGTGAAATGTCATTTTTTAACGCTAGTAGTTTAAAAATGCACGCAGTCAAACATTCAGGCTTGAAGGAGTTTCTGTGTGATGTGTGTCAGAAATCTTACGCTCAGAAGAAGACTTTGAAGCAGCATATGAGGACACATTCAGATGAACGCTTTAAGTGTGAACACTGCGAGAAGGCATTCGTGAAGAAGAGTAGTTTGAATACACATACGAAGATTAGACACGGAGTCACACAATGA
- Protein Sequence
- MFAISVICTKRTQFNSRLSVGTGTKATEVPKANIEEKPKRKRIKGVLTEIGKARIAMYEELKKHRSNLQEILTYSNATPFLGINYRGYMCCYCDTQNPDPADLKKHIRDNHRRLYNAVTPIEKITRKYEFCVKLDLTDLRCTLCDTDIDTLENLLIHLKSEHEREIHMDIKNQFLPFKFNGEVLKCCLCPSVFEKFKILQLHMHTHYRNFICEVCDMGYITGGCLKRHAQTHIKGEFKCSYCSNTYDTLRKVKSHEAAVHVHKYLRNKCGFCKKMFKNHQKRDDHVAEVHGVQSNLIKCRACDKTFTCKRSLTIHTRRDHLIERKHKCIIKLKNEPEPKPNKPTAKPKLPAGKTKPAVREELEKQSNNTQMIIMFSNATPFLQKIDTGYVCCYCREQFQNPADLKKHNHEIHGDKYDPVSPNVIMNSRKSEFCVKLDITGLQCKLCNTDIPSLEALKDHLQNEHKKKIFTDIKNKIIPFKFETEDIRCCICSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLTSLKSHAEKHKLGEFKCQYCPKIYDTYRKKKSHEKAVHITGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRTLKCQACERTFENKRALTIHTRRDHLMERKHKCSQCEMSFFNASSLKMHAVKHSGLKEFLCDVCQKSYAQKKTLKQHMRTHSDERFKCEHCEKAFVKKSSLNTHTKIRHGVTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -