Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459026.1:4373184-4393341[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.5 48 5.7 0.4 1 23 261 284 261 284 0.91

2 11 0.0025 0.24 12.9 0.1 1 23 291 313 291 313 0.99

3 11 2.5 2.4e+02 3.5 0.4 1 10 317 326 317 340 0.78

4 11 0.41 39 6.0 2.1 1 23 347 369 347 369 0.82

5 11 6e-05 0.0058 18.0 0.8 2 23 374 396 373 396 0.93

6 11 7.5e-05 0.0072 17.7 1.2 1 23 402 424 402 424 0.97

7 11 0.028 2.7 9.6 1.0 3 21 437 455 436 460 0.93

8 11 7e-05 0.0067 17.8 2.4 1 23 468 491 468 491 0.94

9 11 0.00046 0.044 15.2 1.0 1 23 496 519 496 519 0.97

10 11 1.8e-06 0.00017 22.8 3.1 2 23 526 547 525 547 0.97

11 11 1.2e-05 0.0012 20.2 1.4 1 23 553 576 553 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.5	48	5.7	0.4	1	23	261	284	261	284	0.91
2	11	0.0025	0.24	12.9	0.1	1	23	291	313	291	313	0.99
3	11	2.5	2.4e+02	3.5	0.4	1	10	317	326	317	340	0.78
4	11	0.41	39	6.0	2.1	1	23	347	369	347	369	0.82
5	11	6e-05	0.0058	18.0	0.8	2	23	374	396	373	396	0.93
6	11	7.5e-05	0.0072	17.7	1.2	1	23	402	424	402	424	0.97
7	11	0.028	2.7	9.6	1.0	3	21	437	455	436	460	0.93
8	11	7e-05	0.0067	17.8	2.4	1	23	468	491	468	491	0.94
9	11	0.00046	0.044	15.2	1.0	1	23	496	519	496	519	0.97
10	11	1.8e-06	0.00017	22.8	3.1	2	23	526	547	525	547	0.97
11	11	1.2e-05	0.0012	20.2	1.4	1	23	553	576	553	576	0.95

Sequence Information

Coding Sequence: atggaCGTCAAAGAAGAAAGTGTAGCTTATAAACTACTTTGCAATGCCTGTCTTTGCGTTGGAAGAAAGCTACATACcattacaaattttaatgaaaaaatacaaaaatattatattgctGCACTGGACGAAATTCCTCTGTTCAGTTTTTCTGCTGTAAACCTGCAGGTCTGCTGGGAGTGTAAAGCCTTGCTAGAGAAGAGCATATCCTTCAAGGAACAGGTTCAGGACTCGTACCGGATATTACAGACTTACACACAAGAGAATCTCCACGAATGCCTCATAACAGATGTGAGCCGGCCCTCTCGCCTGAAGGTTCACTCTCTGGAGCCCACCAGCATATCACCCTTAGACGGCTATGAAACGTTACCAGTATATGCAGCAGAAGTAACCGTTGTTTGCGTCAAAGATGAGCTTAAGGAAGACTGGGAGAGTGATCCTGATCTCGATCGAGaagacaataatattttagatgACATCAGCCCCCTCTCAGATAGTTCAGGAATCACGAAAACCTTCGAGTTTGAGCTACAAGATATATTGGGGTCTATGAAACGAGATGAGAAGAAGAAAAGAGAAGGCAAGCCTAAGATAAAAAGAGACAAGAAGATTAAAAGAGACAAGAAGACGAAAACGGTTAAAGTGGATAAAAAAGTAATTGTTAAGCGAAAACCGTTTAAAGAGCAGAACCAAAAGATCTTAACAATAGAGCTGTCATATGAAGAGGTGATgttagaaagagaaagagaagcgACCAGAGACACATATGTGAAGGCAGAGTATAAATGTGAAAGCTGTCTTATTGGTTTTAACTACAGCAAGTCTTATAGTGATCATGTGGCGGCTAGGCATTCAACGaACCTAGGTGATTACGTGTGCCCTATTTGCCAAACTATAATTCCTTCAGTGGACTCGTTTACAGCGCATTACAGAAGACATATGAGaagATACGAATGCAGTATTTGTCAAAAGAGAACGTTGGATATCAAAGTGATGCAACAACATTATTATTCGACGCATGAAATATCGCTCAAAGAATACAAATGTAATGTTTGTGGGAAGATATCTAATTCCATAGACACACATCGTTATCACAAAGACACACACAAAGCGAGAGTACAATGCACAGAGTGTGAGAAAACTTTCCGCCATAGAGCAGGACTTATGAACCATAGATTAGCAGTCCATGAATACCGCAACAAGTTTCCCTGCACGCTCTGCGACAAAGTGTTCCGGTGGAAAACTAGCCTTAAACGACATCTTGATAAACATGAAGTTAAGGGCAAGTCATCATCAGCGGAAGCCTACTGTGCCATGTGCAACGTGAGCTTCGGGACCATATTCTCCTTCAAACGGCATATGAAGAACAGCCTCAAACATGTCACGCATGATCAGCTCAAATTCATCTGCGACCATTGCAAGAAACGATTCGCGGACAAAACAAAGTTAAGAGACCATATTGAAGAGAAACATCTTCATTTGACTTACAAATGTCATATATGTCAAAAGcCTTCTAAAAACCGCGTTGGTCTGGATCAGCATGTACGTAATGTACACAagagacaaaataataaaatgtgccATCACTGTGGTAAAGGATTTCCTACCAAAGTTCAATTGGAGTCCCACATTCGCAGCCACACCGGCGAAAGACCTTTTATATGCGAATTCTGTCCTACTACGTTCTCCCAGCAGTCCAACTTATATAAACACAATAGACAGGTGCACCTCAACATAAAATCGAAGCGATATCCTATGTGTAAGAAAAAAGAAGATAAACTGCCAGATGTTCCTATATTAGACCATGTTCCGCCCATAGACCCGTATAGACCTGTGACCATGTTGCATTATACAGCTGAAAAAGTTTTCAGCATGTGA
Protein Sequence: MDVKEESVAYKLLCNACLCVGRKLHTITNFNEKIQKYYIAALDEIPLFSFSAVNLQVCWECKALLEKSISFKEQVQDSYRILQTYTQENLHECLITDVSRPSRLKVHSLEPTSISPLDGYETLPVYAAEVTVVCVKDELKEDWESDPDLDREDNNILDDISPLSDSSGITKTFEFELQDILGSMKRDEKKKREGKPKIKRDKKIKRDKKTKTVKVDKKVIVKRKPFKEQNQKILTIELSYEEVMLEREREATRDTYVKAEYKCESCLIGFNYSKSYSDHVAARHSTNLGDYVCPICQTIIPSVDSFTAHYRRHMRRYECSICQKRTLDIKVMQQHYYSTHEISLKEYKCNVCGKISNSIDTHRYHKDTHKARVQCTECEKTFRHRAGLMNHRLAVHEYRNKFPCTLCDKVFRWKTSLKRHLDKHEVKGKSSSAEAYCAMCNVSFGTIFSFKRHMKNSLKHVTHDQLKFICDHCKKRFADKTKLRDHIEEKHLHLTYKCHICQKPSKNRVGLDQHVRNVHKRQNNKMCHHCGKGFPTKVQLESHIRSHTGERPFICEFCPTTFSQQSNLYKHNRQVHLNIKSKRYPMCKKKEDKLPDVPILDHVPPIDPYRPVTMLHYTAEKVFSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121715;
90% Identity: iTF_00447528;
80% Identity: -