Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459011.1:11220054-11227960[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00045 0.043 15.3 0.2 2 23 142 163 141 163 0.93

2 10 0.00066 0.063 14.8 2.4 1 23 169 191 169 191 0.96

3 10 7.5e-05 0.0072 17.7 0.3 1 23 283 305 283 305 0.98

4 10 0.00069 0.066 14.7 0.0 3 23 384 405 382 405 0.90

5 10 0.00061 0.059 14.9 0.0 1 23 420 442 420 442 0.97

6 10 1.6e-05 0.0015 19.8 0.2 1 23 474 496 474 496 0.98

7 10 0.0007 0.067 14.7 0.2 1 23 502 524 502 524 0.97

8 10 0.0004 0.038 15.4 0.3 1 23 530 552 530 553 0.95

9 10 0.011 1 10.9 1.1 1 23 566 588 566 588 0.96

10 10 0.033 3.1 9.4 0.0 1 20 726 745 726 748 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00045	0.043	15.3	0.2	2	23	142	163	141	163	0.93
2	10	0.00066	0.063	14.8	2.4	1	23	169	191	169	191	0.96
3	10	7.5e-05	0.0072	17.7	0.3	1	23	283	305	283	305	0.98
4	10	0.00069	0.066	14.7	0.0	3	23	384	405	382	405	0.90
5	10	0.00061	0.059	14.9	0.0	1	23	420	442	420	442	0.97
6	10	1.6e-05	0.0015	19.8	0.2	1	23	474	496	474	496	0.98
7	10	0.0007	0.067	14.7	0.2	1	23	502	524	502	524	0.97
8	10	0.0004	0.038	15.4	0.3	1	23	530	552	530	553	0.95
9	10	0.011	1	10.9	1.1	1	23	566	588	566	588	0.96
10	10	0.033	3.1	9.4	0.0	1	20	726	745	726	748	0.93

Sequence Information

Coding Sequence: ATGGAAGGGGAAGGTGAAGACTTCAACCTGCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGCCCAGGTGCTGTGGAGCCAGAGGAAGTTATAACAGGCCTAGACAATGTGCAACACACGGGATATTCCAACATGACATCTGAAGAGATGATGGACACGGATCAAATGGCTGCAGAGAACTTAATGTTTTTATCTCAAGATGTAGTGAGCTATACAGAGACAGCAGAACTTGCCGATGATCCTAGCGTGGAGTGTGTCACAGAAGAGGTCATTACTGATGATTGGGTGATTCCTGGTGGACAGGAAAGagtGGAAGTTCCTATGGATCATCTGAATAATGCAGAAGTTgttatgaaagaagaaaatgacCTTGATGTTCCTTTGCCAACAGACCAAGATGAATACACAGCAATGCGTCCTTGGCCGTGCGACTTTTGCTCGCGACGGTTCCGCAAGAAGGCCGCGCTCATGAACCATATGGTGGCTCATCAGAACGACAGGCCGCACGCGTGCAACTTGTGTGGCGTGCGGTACGTACGCAAATGCGACCTCATGAACCATCTGAAGGTCCACGCCTTTGTGCCTGAAAACACCGATTCTATAGATTATGagGATGTTTTAGACAATAACCAAATTGTGAAACCAAAGAAGAAACGCGGTCGGCGAAAAAAGAATCCTGAACCGGTGGAGGAGAACGGTATGTGGGAGAATATGACGTCAGCGCGTACGCAGCAGTGGTCGCGACGGGCGCGGTCCCCGGCGCGGCCCCCGCCCACCCCGCCGTCCCCCCCGGCGGCGCCCCCGCCCCCCTCGCCCCCGCCGGTCCCCAGTGACCCCTCGCGACCCTTCGTGTGCAGGCACTGCGGGGTTGGCTTCGCTAGGGAGAAGGCTTTGCAGTCGCATGCTAGGGTGCACGGCGGCGACTCCCCGGTGGAGTGCGGCACGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCCGCGCACACCACGCAGCGACATCCGCACCTGCCGCCGCGCGACCAGGCGCCAGACCCGCCTTACGAGGACTCCGACTCGGGAGACGACATGGAGTACCGTCTCTCTCCGTTGTCGCACGGGCCGTCAGAGCGCGCGGTGTACGACACGATGCGTGGACCAGAGCTGTTCTGTCAGGACTGCGGCGTCGCATTCCAGCGAGCCGACCTGCTGAGGAGACATGTGGCTGCGGCACACAGTTACAAGCGACACGACAGCTCGAGCAGCACGTGGGCGGAGCACACATGCGACGTGTGCGGCGAAGGGTTCGCGGATGCGCTGCAGCTGTTGGCGCACGCAGAGACGCACGCCGACCGACACCGCGCGCCGCACTCGCAGCCCAGGTTAAAAAGAATGGCTCGAGGTCGAAATAATGCGGCATCATCGAATAATTCAAGGCAATTCCCTTGTCGAGTTTGTGGCAAGGTGTTTGGGTCGCGGAGCTCGCAACAGATTCACATCCGGATCCACACGGGCGAGCGGCCCTACGCGTGTCGGTTCTGCTGGAAAGCGTTCGCGGACGGCGGCACGCTACGGAAGCATGAGAGGATACATACAGGCGAGAAACCATACGCATGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTGCTACGGGAACATGTGCGCTCACACCACTCCGCCCCCGACAGGCGCGCTAACGGTGGTCCCGCCTACTGCTGTGTAGTGTGTGGCCGCACGCTGCACTCGAGCGCGGAGCTGGTGCAGCACCTGATACAGCACTGTGACGCCAACACAGCGCTCAAGAGACAACCCCAGACGGGGCCGCGCAAGTATAAAAGACGACGGAAACTGAAGACGGAGCAGTCCCCCGTGCGCGACTGGGAGCGCACCTCCCCCTCCCCCCCGCCCGTGTCGCGCTCCCCCTCCCCCGCCTCCGACCCGCACCTGTCGCCCATCTCCCCGCCCTCCCCCGCCTCCCCCGCACGACGGCGCAGGCGTCGCGCTGCCTCGCCCGCACCGCGCCCACGCATGATACACACACAGGAGCGCCCGCCCGCGCGCCGCCGTCGCGTGCCCGCGCCCCCCTCCCCGCCGCGCACGTCCCGCCCGCGCCGTCCGCCGCGCCGTCCGGCCGACGACCTGCGCGCCATCAAGACCGAGCCGGAGTCGTCAGTAGACGCAGGCGGGCCGTACAAGTGCGAGATGTGCGCGCTAGAGTTCCCGCGACGCGACGCGCTGCTACTGCACGTGCCGGTGCACATTTGA
Protein Sequence: MEGEGEDFNLQWEEEVEVKHSPGAVEPEEVITGLDNVQHTGYSNMTSEEMMDTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVIPGGQERVEVPMDHLNNAEVVMKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPENTDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPARPPPTPPSPPAAPPPPSPPPVPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGTCGELCWSREALAAHTTQRHPHLPPRDQAPDPPYEDSDSGDDMEYRLSPLSHGPSERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFADALQLLAHAETHADRHRAPHSQPRLKRMARGRNNAASSNNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTEQSPVRDWERTSPSPPPVSRSPSPASDPHLSPISPPSPASPARRRRRRAASPAPRPRMIHTQERPPARRRRVPAPPSPPRTSRPRRPPRRPADDLRAIKTEPESSVDAGGPYKCEMCALEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01064911;
90% Identity: iTF_00925081;
80% Identity: -