Basic Information

Insect: Diarsia brunnea
Gene Symbol: ECU03_0790
Assembly: GCA_949774965.1
Location: OX459017.1:10979496-10987544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00025 0.024 16.1 0.9 1 22 50 71 50 71 0.96

2 13 2.5e-05 0.0024 19.2 3.9 1 23 88 111 88 111 0.97

3 13 0.0084 0.8 11.3 2.1 2 23 119 141 118 141 0.95

4 13 1e-05 0.00095 20.5 1.3 1 20 146 165 146 167 0.95

5 13 3.4e-07 3.2e-05 25.1 0.4 1 23 178 201 178 201 0.97

6 13 0.39 38 6.0 4.9 1 23 207 230 207 230 0.96

7 13 0.018 1.7 10.2 3.3 1 23 237 259 237 259 0.98

8 13 0.061 5.8 8.6 0.1 1 23 264 286 264 286 0.96

9 13 1.8e-06 0.00017 22.8 1.3 1 23 292 314 292 314 0.98

10 13 2.8e-05 0.0027 19.1 0.3 3 23 319 339 318 339 0.97

11 13 0.43 41 5.9 0.1 8 23 357 372 347 372 0.92

12 13 0.0001 0.0097 17.3 1.3 1 23 378 400 378 400 0.98

13 13 0.71 68 5.2 0.7 3 23 408 430 407 431 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00025	0.024	16.1	0.9	1	22	50	71	50	71	0.96
2	13	2.5e-05	0.0024	19.2	3.9	1	23	88	111	88	111	0.97
3	13	0.0084	0.8	11.3	2.1	2	23	119	141	118	141	0.95
4	13	1e-05	0.00095	20.5	1.3	1	20	146	165	146	167	0.95
5	13	3.4e-07	3.2e-05	25.1	0.4	1	23	178	201	178	201	0.97
6	13	0.39	38	6.0	4.9	1	23	207	230	207	230	0.96
7	13	0.018	1.7	10.2	3.3	1	23	237	259	237	259	0.98
8	13	0.061	5.8	8.6	0.1	1	23	264	286	264	286	0.96
9	13	1.8e-06	0.00017	22.8	1.3	1	23	292	314	292	314	0.98
10	13	2.8e-05	0.0027	19.1	0.3	3	23	319	339	318	339	0.97
11	13	0.43	41	5.9	0.1	8	23	357	372	347	372	0.92
12	13	0.0001	0.0097	17.3	1.3	1	23	378	400	378	400	0.98
13	13	0.71	68	5.2	0.7	3	23	408	430	407	431	0.81

Sequence Information

Coding Sequence: atgCCACCTAAACGAAAGAAGATAGGGCGACCGCCTGGGACCAAAAATAAGAGAAGGAAAACGTCAAACAAGAATCTTGTGAAAAACAATTCATATTCGGTTTTGATACCGAAGAAGGAAAAAGAAATATCTTCTCCAGATGTTGAATACGTCTGTAATGTTTGTAATAAGAATTTTAAAACAGGAAAGGAGTTATTGGTACATCATAGACGCTGTCGCACACTAAAATACACTCAAAATATGGTTATCTCTAAGGCAACATACAGTTGTAAAGagtgtcctaaaaagttcagATTTAAGAAGAGCTTTACACAGCATCTTCGGAATGAGCACTCCAAGCAACCTGGCAGTGTCTCTTGTGACCAGTGCAATGTCTGTTGCCCAGATAAGAAAACTCTGATTGAGCACATCAAAAATGTTCATGAGAGAGACATTTTTTCATGTCCACATTGCAAGAAACCATTTGTGCGGCGCTCACATGTGCTTCGGCATATGGCGCAGAGTGGATGTGATGGGCAGGGAATTGCCTCATTTACCTGTGAAATTTGCGACGCAAAATTTTCCCGAAAAGACAATTTAATGGTCCACATAAGGTTGCAACATATTATCAAAAATGCTTTCTATTGCAAGAATTGTCTATACTCTACAAAGAACTTTTCCAAATTGGTCAACCATTGGCACAAACAACATTcagAGACACCTGATCAATATCAATGTCACCACTGCACCAAGTGGACCAGCTCCCGAGCCGCCATGACCAAGCACCTCGAAATACATGGCGAGAAGAAGTTTGCTTGTGATGtgTGCGGCTACAGCACGTTCACGATCGAAGTGATGCGCCGCCACGCACTGACGCATGTGGACGAGAAACCCTACAAGTGCTCGCTGTGCGACAAGTCGTACATCCAGCGCGTGCAGCTGCAGCGACACCTCGAGAAGCACACCGGCAACCCCTGCAGCAAGTGTGGCGAGACCTTCAATACTAGGGCCAGGTTGCTCATTCACATGAGAGAACATATGGGATTAGAGAAGTTATTTTGTCCCTTGTCAACATGTGCCTACTCAACAAAAGAATTCATCAGTGAGGCCAGTTTGAATAATCATTTGAAAGTGCATTTAGATGACAAGCCGTACAGTTGTGAGGTGTGCGCCAAGCAGTTCCACTCGGAGGTGAACCTGCGGCGGCACCTGGAGACACACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGAGCAGCTCATCCGCCACGTGCGCAAGCACCACCCCTCCATCTTCCGCGGTCACCTTCACCACGTGCGCTCCGTACTCGGTTCCAACAATTCAGTGGAAAGAGTCAAAAAGTCAGAAATAGAATCTATATTAAACCTGTTAGACGTGGAGTCGGATCGTATTCTGCAAGGTTACGGCGGGGCGGGCGTGCTCTACGGCGGCATGCAAGACGACCAGAGCAGTTCCAGTAGCGAAGTTCAGAATAagAAAGGAAATTTTGCCCTCATGACAGAGGAAGAGCTGACAGAGAATTTGAAAATGTTACTTGGACACCTGATTGATGAGGAGACACTCGACTTGTTTGGTTGGCCCGACGAGAGCGTAGACGTGATCTTAGAAAAAGTGATCGAGCAGTGTGGTGCAAAACCAGCAGACCGCGAGAAATGGACTCGCGTGCAGCGCCTGCGCGAAAACTCCAAGCATTTATTCTTATACGTGATCGAAGACAAGAACATCGCGCGTATGCTGGATACTCACACTATAGATCAAATCGTCAAACATATCCTCAAACAAGTTAGCGAAGATGACACTACACAAAGTACCTAA
Protein Sequence: MPPKRKKIGRPPGTKNKRRKTSNKNLVKNNSYSVLIPKKEKEISSPDVEYVCNVCNKNFKTGKELLVHHRRCRTLKYTQNMVISKATYSCKECPKKFRFKKSFTQHLRNEHSKQPGSVSCDQCNVCCPDKKTLIEHIKNVHERDIFSCPHCKKPFVRRSHVLRHMAQSGCDGQGIASFTCEICDAKFSRKDNLMVHIRLQHIIKNAFYCKNCLYSTKNFSKLVNHWHKQHSETPDQYQCHHCTKWTSSRAAMTKHLEIHGEKKFACDVCGYSTFTIEVMRRHALTHVDEKPYKCSLCDKSYIQRVQLQRHLEKHTGNPCSKCGETFNTRARLLIHMREHMGLEKLFCPLSTCAYSTKEFISEASLNNHLKVHLDDKPYSCEVCAKQFHSEVNLRRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKHHPSIFRGHLHHVRSVLGSNNSVERVKKSEIESILNLLDVESDRILQGYGGAGVLYGGMQDDQSSSSSEVQNKKGNFALMTEEELTENLKMLLGHLIDEETLDLFGWPDESVDVILEKVIEQCGAKPADREKWTRVQRLRENSKHLFLYVIEDKNIARMLDTHTIDQIVKHILKQVSEDDTTQST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01026611;
90% Identity: iTF_00301441;
80% Identity: -