Dbru003057.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia brunnea
Gene Symbol
L
Assembly
GCA_949774965.1
Location
OX458997.1:10656138-10674733[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.7e-06 0.00017 22.9 1.7 1 23 80 102 80 102 0.99
2 17 0.73 70 5.2 5.8 1 23 108 130 108 130 0.97
3 17 9.9e-06 0.00095 20.5 4.1 1 23 136 158 136 158 0.99
4 17 3e-05 0.0029 19.0 0.1 1 23 164 186 164 186 0.98
5 17 0.00047 0.045 15.2 0.1 2 23 202 224 201 224 0.95
6 17 7 6.7e+02 2.1 0.1 9 23 255 270 251 270 0.93
7 17 0.35 34 6.2 0.0 3 23 322 342 321 342 0.97
8 17 0.19 18 7.0 0.0 3 23 356 376 355 376 0.91
9 17 0.00064 0.062 14.8 0.3 1 23 384 407 384 407 0.95
10 17 0.04 3.8 9.1 0.0 1 23 412 435 412 435 0.92
11 17 0.016 1.5 10.4 0.1 1 23 496 520 496 521 0.94
12 17 0.00023 0.022 16.2 0.1 2 23 584 605 583 605 0.96
13 17 0.068 6.5 8.4 0.0 1 23 613 635 613 635 0.97
14 17 2.3 2.2e+02 3.6 0.8 2 23 643 664 642 665 0.94
15 17 1 98 4.7 0.3 1 23 742 764 742 764 0.94
16 17 0.0041 0.39 12.3 0.1 1 20 772 791 772 794 0.95
17 17 0.18 17 7.1 0.3 1 23 801 823 801 823 0.94

Sequence Information

Coding Sequence
ATGCTGTTCGTGTTCAGTTTTATTGGTAAAATTCGCCCCAAGTCGTTTAAAGTATGTTTAGAATATGACTCCTGTGGTACAGAGGCGCTGGGCAGCGTGGGTAGCACGGCGGGCAGCTCCTGGCCGTCGTCGACGCCGGAGCCGTCGCCGTCACCGGCGTCTACACCCACCTCGGCCGACGCAGCCGACGCCGAGGCCGAGCCACCCTTCACGCTCGGCGCCACCGAGCACACCCCCTACCAGTGCCAGTTCTGCGACAAAGCCTTCCCCAGGCTCTCTTATCTCAAGAAACATGAACAGACCCATTCGGATCAGATGCCGTTCAGGTGTGAGTTCTGCTCGCGCCTGTTCAAGCACAAGCGCTCTCGCGACCGCCACGTCAAGCTGCACACCGGGGACCGCAAGTACCGCTGTGCACACTGCGAGTCTGCCTTCTCCAGGAGTGACCACTTGAAGATCCACATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGCACCGTGTGTAACCGAGGGTACAACACGGCAGCCGCTCTGACGTCACACATGCAGGGACACAAGAGAGACCGTGAAGGCCGGGAGCCCGACAGACGCAGGGCTCTGCGCTGTCTGCGGTGTGGGGATGCCTTCCGACGACCAGACCTGCTGCAGGCGCACATGCTGAGCGCTCATGGCGTGGACACTCCCGCGATGACTCCACCACGACGCGTTGCATCTCAGCCGCCGCCTACATTACTCGCCTGCATCTACTGCACTCGTGACACATTCACCAGCATGGAGCAGTTACAACTTCATGTGCGAGCAGCACACTCAGCCCTACTGAATGGTGAAGGACCACTTCAAGTAGATCAGCCTGCACCCACTGATCTAAGTCGACGGGCGCCTGACGAAGGGCCCCCAGTCAAACGTCCGCGCTCCTGCTCTGGCACAccacaaacaaacttatcaccgAGCACACTGCTCTGCAATCAGTGTGATGCTGCGCTCCCAGATTTTGAAGCATTTCGGGCTCATTTAAAAGGTCATATTGAAGAAGGAGGAGAGCTGCGATCAAGTCCAGCTCCTTGCGTTCACTGTGGCGCTACGTTCGCGGATGCTGCGGCCTCGGAGCGTCACCTCACAGCGCATTACCTGGCGGTGTCCTGCGAGTACACCTGCCACAGCTGCGCTCGGAGCTTCGCTGCTCCTGATGACTTGCAAAAACATTTGCTTGAATTGCACTCGCATCATCTTTATAGATGCGCTCTTTGCAAGGAGGTTTTTGATTCGAAGGTTGCGATTCAGGTGCATTTTGCGGTGGCACATAGTGGTGAAAATAAGGTTTGGGTATGTCGTTCTTGCGGTGCGGGTGCGGGCGCTCTCCGTTCGGAAGCTGAGGGCGCGGCCCATGTTCGCTCTCTTCACGCGGCCGCAGCCCCTCGCTGTGCATGTGGAGCCCTACTTGGCAGTGGGGTCACCGCGAGGACCCCTCGACCACACCGCGCGTATCGGTGCCCAGTGCCTGCCTGTAATGATGCATTTGCTGTGCAGTACTTGCTTGAACGACATATGCAGGCTCATCACGCAATGCAACAACAGGTTCTAAACGGTGACTTACCAAGAACAAAACGAATGGACTCAACCAACGGCGGCGAGGGTGGAGACGACGCGCGATCCCCATGCTCTCCTGGAGCGGAGGGAGGTGGTGTGACCACAGCGGTGGTGGCTGCCAGTGAGGAGCGAAGGCGAAAGAACGGCGCCGTCGCCTTACAGTGTGCGTACTGTGGGGAGCGCACGAGAAGCAGGGCAGAACTGGAGGCGCACACACGAGCTCATTCAGGGGCCGCGGCGGCGAGGCACAAGTGTCTGATCTGTGATGAAGTGCTGCCGTCTGCGGCGGTGCTTGCTGAGCATAAGCTCACGCACTGCAAAGTGGTTTCTGGCGACACGTGCTCCCGCTGCCGCGCGCGGCTTGTGTCTGAGGACTCGTTCCTGGGCCACATGGCGCGACACCACCCCGCGCTGCCGGCGCCCTGCGTCGTGTGCCGCCAGACCCTCGCCTCGGAAGCGGAGGCTAGGCTTCACGCACGCTTCCATCTGCGACCCGGGGAGGATGAGCAGAGGTGCGCCATATGTCTACGCGCGCTGCCGGAGGGCGAGGCCGGTTCGGGTGCACGCGCGTGCTCAGCGTGCTACGCTCGGCACGCGGCGCCGCGCCCCCCGCGCCCCCCACCGCCCGCCGACCACGACTGCCGCCTGTGTCGCCGCGCGCTCGGCTCCCCCACACGCCTGCAAGCGCATCTCATCGAGCACACGTTCGCTGGTATTGGCGCCTTCACGTGCTACCTGTGCTCCGCGGTGTTCACGAGCGCGGCCGGCCTGCAGCGCCATCTGCCGGAGCATGCGTCCGCGCCACGACCCTACGACTGCGCTAGATGTGGTCTCAAGTTTTTCTTCCGAGCAGAACTTGATAATCACGCGTTCGTGCATCTTGAAGAGGCAGAGATTGCTCAGCGAGCTTTCTACGAAGCGTACGCTCGCGGAGCTGCGTCAGCGTGGGCCGCGTTGGCACCACCTGAACCACGAACGTCTCCGCCACAAGCTGAGGTCAAGCGCGAGCCGGAGATCAAAGAGGAACGAGGAACTGACGAGTATATTGAGGTGTCATCTCCGCCTCCCGCGGCGCCGGCACCCGCGCCCCCCTCTTTGCCCTCGCCCGCACCAGTCGTAAAGCAAGAGAAGCCTGACGAGGAATAG
Protein Sequence
MLFVFSFIGKIRPKSFKVCLEYDSCGTEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMLSAHGVDTPAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPLQVDQPAPTDLSRRAPDEGPPVKRPRSCSGTPQTNLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHSHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSLHAAAAPRCACGALLGSGVTARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGDLPRTKRMDSTNGGEGGDDARSPCSPGAEGGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLVSEDSFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGSGARACSACYARHAAPRPPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTSPPQAEVKREPEIKEERGTDEYIEVSSPPPAAPAPAPPSLPSPAPVVKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00822228;
80% Identity
-