Dbru031855.1
Basic Information
- Insect
- Diarsia brunnea
- Gene Symbol
- -
- Assembly
- GCA_949774965.1
- Location
- OX459025.1:4850833-4874729[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 40 2.1 2e+02 3.7 0.4 1 23 235 257 235 257 0.94 2 40 0.047 4.5 8.9 0.3 2 23 329 351 328 351 0.93 3 40 0.027 2.6 9.7 4.0 1 23 356 379 356 379 0.95 4 40 0.018 1.8 10.2 1.1 1 23 384 407 384 407 0.96 5 40 0.27 26 6.5 0.2 2 23 410 432 409 432 0.93 6 40 0.28 27 6.5 1.1 2 22 439 459 438 459 0.93 7 40 0.32 31 6.3 0.3 1 23 520 543 520 543 0.91 8 40 0.084 8 8.1 0.2 2 23 571 593 570 593 0.93 9 40 0.65 62 5.3 0.5 2 23 616 639 615 639 0.94 10 40 0.0015 0.15 13.6 0.6 3 20 646 663 644 667 0.90 11 40 0.17 16 7.2 0.6 1 23 672 695 672 695 0.97 12 40 0.011 1.1 10.8 0.2 2 23 701 723 701 723 0.96 13 40 7.2e-05 0.0069 17.8 5.0 1 23 727 750 727 750 0.97 14 40 0.0053 0.51 11.9 0.9 2 23 757 778 756 778 0.96 15 40 0.38 36 6.1 0.8 1 23 822 844 822 844 0.95 16 40 0.3 29 6.4 0.1 2 23 872 894 871 895 0.92 17 40 0.00022 0.021 16.2 0.4 2 23 915 937 914 937 0.96 18 40 0.0062 0.59 11.7 3.9 1 23 942 964 942 965 0.95 19 40 8.9e-05 0.0085 17.5 0.9 1 23 969 992 969 992 0.96 20 40 0.28 26 6.5 0.2 2 23 995 1017 994 1017 0.95 21 40 0.13 12 7.6 1.8 2 20 1023 1041 1022 1046 0.91 22 40 0.013 1.3 10.7 2.5 2 23 1091 1113 1090 1113 0.93 23 40 0.0073 0.7 11.5 0.0 1 23 1186 1209 1186 1209 0.91 24 40 6.1e-05 0.0058 18.0 0.9 1 23 1214 1237 1214 1237 0.95 25 40 2.9e-05 0.0027 19.0 0.3 1 23 1243 1266 1243 1266 0.96 26 40 0.0083 0.79 11.3 2.4 1 23 1303 1325 1303 1325 0.96 27 40 0.15 14 7.3 0.1 3 23 1354 1375 1354 1375 0.96 28 40 0.016 1.6 10.4 1.9 1 23 1395 1418 1395 1418 0.96 29 40 7e-05 0.0067 17.8 0.5 1 23 1423 1446 1423 1446 0.96 30 40 0.0026 0.25 12.9 0.8 1 23 1451 1474 1451 1474 0.96 31 40 0.002 0.19 13.3 0.9 3 23 1478 1499 1477 1499 0.95 32 40 0.025 2.4 9.8 0.8 2 21 1507 1526 1506 1527 0.94 33 40 0.0071 0.68 11.5 1.7 1 23 1581 1604 1581 1604 0.94 34 40 1.6 1.5e+02 4.1 0.0 2 23 1677 1700 1676 1700 0.94 35 40 3.3e-05 0.0032 18.8 0.1 3 23 1707 1728 1706 1728 0.94 36 40 0.0059 0.56 11.8 2.8 2 23 1733 1755 1732 1755 0.94 37 40 0.019 1.8 10.2 5.1 1 23 1760 1783 1760 1783 0.96 38 40 4e-05 0.0039 18.6 5.0 1 23 1787 1810 1787 1810 0.97 39 40 0.00047 0.045 15.2 0.3 2 23 1817 1838 1816 1838 0.96 40 40 1.7e-05 0.0016 19.8 0.6 1 23 1844 1866 1844 1866 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATAGTGGTGAAGGAGAGCCCCGGGCTATGCCGGTGTTGTCTCTCCGAAGGATGCTACAAGGATTTGGGGTCGGAATACACTTGGATGAACGAAACCGAAGTGTATGCTGATATGCTATTGGAATGCTTTGATATTAGCATAACTCAACACAATGATGGTCCAAATGGCCCAAACCGACTCATCTGCGAGGTCTGCATCACTCGGCTACGGGATGCCTGCAACTTCAAGAAGCAGGTTATGGACTCGGAGAAGAAGTTTATTGATATGATGGGCAGAGGAGAATTTAGGCCTAAGATGCTAATTTACCAGACGCAGCTGAAGTGTGAAGTTGGACCACCGGTGGAGGAGCACATTGAAGATGAAGACATTCAATATCTTGAAGATGATGATTTCGGTGATGATGATCTCAAAGACGAACTGACCCAACCTTCAGTATCAGACGTGACAGTATCCACGCTACCCATTAAAGGCAAGCGTGGCCGTCCCCGCAAGAATACACCGGTGAAACCTGAGAAGAGAGCGAAGGTCTCGAAGGTCGACGACAAGGCGAAGACCTCGAAAGCAGTTGCTAAAGGTAAAAAACCGAAGAAATACAAGAGCACAGAGTCTTCTTCGATGAGAAGACGACGGAACCTCCAAATACTATTCAACAAtacatctataataccttttaaatggcgcggaaagtatCTCTGTTTCTATTGCAGCAAAGACATTGCCGAATATACTGAGTTAAGGGATCACACCAAAGCACATGGCAACTGTTCTATAAAAGACCAttctttaaaagttttaaaaggagGGAAGAATATGGAAATAAAAGTAGACATCTCTTGTATTTCTTGCGAAGTTTGTGCAGAAACCTTACCGTCTTTCGATGAAATCATTGCTCATTTGTTTGATAAACATGCTCTAGAGTACGACAAAGGAGTAGAAATGGCTATTGAAGAATATAAACTTGCTAGTCTTAGCTGTACAGCCTGCGATGAAACGTTCACATATTTCGGATACCTAGTTTCACACGTCAACAATAACCATCCCAAAAACTGCCACATCTGCGAGAATTGCAATCAGAAATTCAACAAAAGAAGAGATCTCTTTTCTCACGTGAAAAACTACCATCGTGAAGGAGGATATAAATGCGAAATGTGCCCTCAAGTTTTCAattcaatgaatattttaagaaaacacAGAAACAATAGGCATTTGACACGATGCAATATATGCAATTTGAAACTACCGTCAGCTTCTATGAGACAGAAGCATATCGATTTGGAACACCCAGACGACGGGTCTTTACAATGCGATGCTTGCTTCAAGGAGTTCCATACAAAACGAGGCCTTAAGATGCATGCAAGAAAATGCAAAGGAGAAGAGATCTTCGGAATCGCGATCAAAGAAGAAAACTCTGCTATGGACTTAGATTTAGACGAAAATTACGATAACCCAGTCAAAAGACCTTGCGTCAAACAACTTCGGGAAAACATAGTCACAGTCATTAACATGTCTACCGCAATACCTTTTAACTTTTATAAGAATAAGTTCAACTGCTTCTATTGCTCCAAAGATTTCGGCGATTCAGATGTGATGAGAGAACACACGGTTATAGAACACCCCGTATGCGATGTTAACGAGAAATGCATTCGGAAGTGTAGGGAATCAATATCTTGCGTCAAAATCGATATTTCATCACTCACTTGCAAAGTCTGCTTTGAGTCTTTGGCAGACTTGGACCACCTAATCGATCATTTAATCGAAAAACACGATGCGAAGTACGACAAAACTATAACCACGTGTCTACAACCTTATAGGCTGATTAAAGACAGCATGGTCTGTCCCCACTGTCCTAACGAAATCTTCAACTTCTTCGGATCGTTACTAAAACATATAAACTTGAAACATactaataacaatataatttgcGTGTACTGCGGTCAAACGTTTCGCAGAGATCAGAACTTACGAGTTCATATTTGGCGTCACCACAGAGCTGGGAGGTTTAAATGCACCATCTGTAACGCTGATTGCAATATTCCATCTCGTCTGTACATGCATATGGCTCGCGCTCACGGCGTCAGAGCTGCTAAATGCCCGAAATGTCCCGATTCTTTTGCAACGCAATACGAAAGGCAGAAACATTTAATCATCGCCCACAACACCGGTCACAAATGCACTTATTGCGGGAAACTGTTCACTAGAAACTCTTTTATGAATAATCATATTCGGAGGACGCATATGAAAGAAAAGACTAAAGAATGTTCTGTCTGCAATGCGAAGTTCTTTAATACTGTTTTGTTGAGGAGGCATATGGTTAAGCATAGCGGGCAGAAGATTTATAGCTATTGGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTACTCAACCACACAACGTTGATACCTTTTAAATGGCGCGGAAAATACCTCTGCTTTTATTGCGGAGATGATACGAAGACGCCCGAACGTCTCCGAAAACACACGAAAGCTCACGGACCTTGCAGCGATAGGGACCGAGCTATTAGACTAGTTAAATCAGCTGATGTAGAAATCAAAATCGATGTCTCCGATGTTAGTTGCGAGATTTGTTCAGAATCATTTCCGTTTTTAGACGAAATCATCGAGCATTTGATTTTAAAACACCATATGCCTTATGTTAAAGGTGTAGACATATTCTTATCAGCCTACAGGTTATTAGATCTACAATGTCTCCTTTGCGATAAAAGCTTTAATTACTTACGTAAATTAATCAGCCATATGAATGTCGCTCATCCGAACAACAGTTTTGAGTGCGCGAAATGTGCGAAGAAGTTTAATAAAAGGAGGGATTTAGATTCGCATATGAGATTCCATCATAAGACATGCCATTCTTGTACCAAATGCGATGAGAAGTTTCCTACCAACGCAGAGTTACAGGTTCATAGGTCTACCGCTCATTCTTCGACCTGCAACATCTGTTTTGAAGTCTTTGCAAATGATGGAAAGAGGCTAGCTCATCTAAAATCAGACCATGCCAGTGATCAAAACCAATGCGGTTTCTGCAATAAAACTCTAACAACCAAACAAGCGTTTATAAGGCATGCCGCAAATTGCGAACATAAACCTACCGAAGAATCCATTATAATCGATGACGAAGACAAAAAGATTTCTGTCAAAGAAATAAGAAAAGGCTTAGCAGCCATTTTTAATATGACTACCGCACTTCCTTTTAAATTCTTCATGAACAGGCTCCGATGTTTCTACTGTACGAAAGACTTTAACTCCTGCGAGGATTTAAAGGAGCATACGTTGAATGCACATCCTCATTGCGATATATCTTTCAAGTCCATGAGATTGAGGAACAGATATGACGGTGTTCAAATCAAAGTTGATATTTCAGCCTTGTCTTGTAGACTGTGCCATATCTCTTTGCAGGATTTGAACGATGTGGTGGACCATTTGAGCAAAGAGCACAAAGTCAAATGCGACTTTTCTGTAGAGAGTAATCTACAACCTTACAAACTGATTAAAGACAACTACCCTTGTCCTATTTGTGGCGAAGTTTACAGATACTTTGGAGTTCTACTCAAGCATGTTAGCGCCTCTCACAGTGGTAACAAACATATATGCATGTACTGCGGAAAAGCGTTCAGAACGGATCCGAATTTAAGAGCTCATATATCCAGACGACATAAAAACACTGATAATCACAAGTGCAGTGATTGCGATCTTGTTTTTGCGACTAACGGTGCGCTTAGGAATCATCAAGGGACGGTTCACGATGGTCTACCAGGGCCGTACGAAGGCTGTACCTCTGAAAGGCGACGGAAAAACTTGAAACTACTGTTCAACCACACAACCATCATGCCTTTTAAATGGCGAGGCAAATATCTTTGCTTCTACTGCGGAAAAAACTATACAGAATACATAGAATTCAGAAAGCATACTAAATCTCACGGACTATGTACCACTAAAGATTACTCCCTCAAACTAATCAAAGGCAACAACGTCGAAATTAAAATCGATGTCTCAGAAATTGGTTGTGACATCTGCAATGAACCCTTCAACAGATTCGAGGAAATAATCGATCATTTGATCTCGAAACACAATttagaatacaataaaaacatcGATATACCTTTCCAGGAATATCGACTCGTCGACTTTCGATGTTTACACTGCGAAGAGCAGTTTTCTTACTTCGGTTATTTGGTTAAACATGTCAATAATGTGCACCCGCAGAATTGTTTCATATGCGATGATTGTGGAGTTACTTTCAACAAGAAAAGAGATTTGTCTATACACTTGAGGAATTACCACAGACAAGGAGGTTATCCCTGCGATTTATGCTTGAAAAACTTCGAAACTCGACTTATGTTGCGGAGGCATCAAAATAATATGCATTTTAGACACTGCAAGAGTTGCGGTTTGCGATTCGCGTCCTTATCTCTCTTACAAAAACATGTGTTAGTTGATCATCCACAGAATGAGAGTAATATGAAGTGCAGTTACTGCTCCAAAGAGTTCCACACTGCTTTAGGTTTGCGGCAGCATATAAGTAAATGCAAAGTAAAGATTATATCGCAGGTCGAACCACAAACTTCCTTCCTAAACGACAGTAATATAGAACCGAAGAAAAAGCAGAACATACTACAAATAAGACAGAACATACAGTGTGTACTCAATATGTCGACTGCTGTGCCTTTCAAATTCTTCTCTAAATACTCCTGTTTTTATTGCTCAAAGAAATTCGTGGAATTCGACGAATTACGCCAACATACTAGCCTTGAACATCCTGTTTGTGATTTGAAATCCAAATGCATGAAGAAATGTAAAGGTGAAAGGATAGCTGTCAAAATCGATATATCTACGTTGGCTTGCAAACTATGTTGCCTTCCTATGCCTAACTTCGAAGATTTGATCTCACATTTAATAGCTGAACACAAAGCGAATTATGATACGTCAATTTCTGGATGTTTAGAACCTTTTCGCGTTATAAAGGACAACATGCCATGTCCTATATGCCCAGATACTGTATTCAGATACTTCGGCATTCTGCTTCGTCATATGAACTCCGAACACAGCAACAATAATCGGATATGCGACTTCTGCGGTCGAAGTTTCAGAAATGCGGCAAATCTAAACGTGCATATAACTTACGCACATACCGGTTCATGCGAATGTGACATCTGCGGTGTTAAATATAAGAACCAATGGTGTTTGGCACGGCATAGAGCGAGGACCCACGATGCGAAAGACCATAAATGCCCGAAATGCCCTGAGCAGTTTCAGTCGCAGTATCATAAGCAGAAACATCTTATAAAAATGCATAATGTTGGACATAAATGCAGTTATTGCGGGAAAATGTTTACGAGAAACTCTTTCATGAAAGATCATGTACGGAGGACGCATTTGAAAGAAAAGAACATTCCGTGCTCGATATGCAATGAGAAATTTTTCGATAACTACCTTCTCAGGATGCATATGGTAAAGCATGAGGGGGATCGGAAATTCAGCTGTACTGTTTGTGGTAAAGCCTTTTTGAGGCGAAGTAATTTGAGCTCGCATATGGAGATGCATAAGAAATATGGGCATGTGCAGTTGTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNETEVYADMLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYQTQLKCEVGPPVEEHIEDEDIQYLEDDDFGDDDLKDELTQPSVSDVTVSTLPIKGKRGRPRKNTPVKPEKRAKVSKVDDKAKTSKAVAKGKKPKKYKSTESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRDHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCAETLPSFDEIIAHLFDKHALEYDKGVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNNNHPKNCHICENCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDLDLDENYDNPVKRPCVKQLRENIVTVINMSTAIPFNFYKNKFNCFYCSKDFGDSDVMREHTVIEHPVCDVNEKCIRKCRESISCVKIDISSLTCKVCFESLADLDHLIDHLIEKHDAKYDKTITTCLQPYRLIKDSMVCPHCPNEIFNFFGSLLKHINLKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICNADCNIPSRLYMHMARAHGVRAAKCPKCPDSFATQYERQKHLIIAHNTGHKCTYCGKLFTRNSFMNNHIRRTHMKEKTKECSVCNAKFFNTVLLRRHMVKHSGQKIYSYWETEVTKHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPERLRKHTKAHGPCSDRDRAIRLVKSADVEIKIDVSDVSCEICSESFPFLDEIIEHLILKHHMPYVKGVDIFLSAYRLLDLQCLLCDKSFNYLRKLISHMNVAHPNNSFECAKCAKKFNKRRDLDSHMRFHHKTCHSCTKCDEKFPTNAELQVHRSTAHSSTCNICFEVFANDGKRLAHLKSDHASDQNQCGFCNKTLTTKQAFIRHAANCEHKPTEESIIIDDEDKKISVKEIRKGLAAIFNMTTALPFKFFMNRLRCFYCTKDFNSCEDLKEHTLNAHPHCDISFKSMRLRNRYDGVQIKVDISALSCRLCHISLQDLNDVVDHLSKEHKVKCDFSVESNLQPYKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKNTDNHKCSDCDLVFATNGALRNHQGTVHDGLPGPYEGCTSERRRKNLKLLFNHTTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVLVDHPQNESNMKCSYCSKEFHTALGLRQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRQHTSLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKLCCLPMPNFEDLISHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -