Dbru005781.1
Basic Information
- Insect
- Diarsia brunnea
- Gene Symbol
- -
- Assembly
- GCA_949774965.1
- Location
- OX458999.1:12464444-12466999[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-09 4e-06 27.4 0.1 1 38 14 50 14 56 0.91
Sequence Information
- Coding Sequence
- ATgggcagaaataaaaaaaatagaaaaataggCACTCATACCGAGGAGCAAATGCAAAGAGCATTAAATGCCGTTAAAGCCGGCAAAAGCATCCGAGTGGCGGCTAAAGAGCACCAAATTGCTTTTTCCACTCTCCAGAGGTATAATACTAAAGAAAATCCTGTACGGTTGACACCAAATTATTCGGTCAGAAAATTTTTTGATGCAGAACATGAGCTGGCTTTATGCGAGTACTTTAAAAAATGCGCTTTAATGTTTTATGGTCTTACCACTAGAGATTGCCGCCAAATAGCATATGAAATGgcaaaaattaataatgtgCCACTTCCAGACAGttgggaaaaaaataaaatggctggcATAGATTGGCTCCGAGGATTTCGTGAGCGGTTCCCTGATATGTCATTGCGTAAACCGGAAAACTGCAGCTTGGCACGGGCAACAGCATTTAATAGagaaacagtaaaaatattttttgtcaatcttCAAAATGTGCTCAGCCGCAGTCCAGCCTTTGCAGATGGCACTCGCATTTATAATTTGGATGAGACTGCTACAAGCACAGTTCAGAAAAATCCGAGAGTTTTAGCTCcaaaaggaagaagaaacatATGCAAAGTGTCCAGCGGTGAAAAAGGGTGGATGAACACTGAGATTTTTATAGAGGTGATGAAGCATTTTGTGCAGCGGTCAGGATCTACAAAAGATTCTCCAACAGTCCTCATAATGGACAACCACGAATCACATTTATCCATTGAAGCACTTGATTTGGCGAAAGAGTCGGGGGTGACTGTGCTCACTTTACACCCGCATACATCAGCGAAACTTCAGCCGTTAGACGTTGGCATCCATGGGCCGTTTAAATCGTACTATGCATCAGCAATGGAGTCATGGATGATGCGAAACCCTGGGTGTCCAGTGACCATTTATGAAATTGGAACGCTAGTTGGACAAGCTCACGACAAGTGTATGACGcctgtaaacataaaaaattcaTTCAAGAAAACCGGTATCTACCCGTTTGACAGAAATATATTCTCGGATGAAGATTTTATGCCGAGCAGCGTCACTGACAGACCTGCTGTTGTACAACCGACAGATTTGGTCGTCGACAGTAATGAAAACACAGTACCAAATCAAGAAACGGAAGATATTAATGAAATGTCAAATCGTGATGAAGATACTCCAAGTCCCTCTGTAATAGACGCCATTCAACAATCGATTTTTGAATCTTATGTACAAGGCACCAGTGCTGCGTCATTGCCTGTTACGTTATCTTCAGAAGTATGTGTTACAACTCCACCTGCCCTGTCTCAACTATGTATGGCTGCAATAATAGAACCTGTTTATGCAATCCCTGCAGTTCATTCACAAGATGACTATCTAGAAATCTCACATTTTTCACCCCCACCATCAGCATCAAGACAAGACTCTAATGAATCATCTGTCAGGTCATTGCATGCCAAAGTAGTAGTTACTCCAGATGAATTCCGAAAACCCTTAAAAGCAGCTGCAAGGAGTAAGAATAGAAAGCCGAGGCGATTAGGTAAATCTCTTATTGCAACTGACACTCCTGAAAAGGATGAGATTGAGAAGAACAAAAAcgcaattaaaagaaaaaaaatatttcaagaaaagAAAGCCACAGAAAAGAAAGCCTCAGGAAAGAAAGCTATTAGAAAAGTTCTTCAAAGCGACTCTGAAGATGATTGTGAAATTGTCGTAAATGATGACTCACCAGACGAAGGGAGTTGGTTGAGTGATGAAGAAGgtaatgttaatattattacgCAAGAGTCATTGATGGAACCTTTGCCAAGAAATCCAAGAGAGGGAGATTATGTTTTGGTAGAATTTTCGTCCAAAAGACAATTGTTGTACTATGTAGCCAAAGTACTAGAAGAACGAAACGATTCACTTGAGCTCTATGTAAGTTATTTAAGACACAAGAAAGGACGTTTTTCCCTGCCAAATACTCCAGACTTGGCCTATGTCAAGGATGATAATATTAAGCTTTTGTTACCAACTCCTGCGTCAGGTGGTAGTACTGCTCGTCAGCAGGCATATCTTACTTTTAGCGTTGACCTGAGTGGCATAAATATTCGTTAA
- Protein Sequence
- MGRNKKNRKIGTHTEEQMQRALNAVKAGKSIRVAAKEHQIAFSTLQRYNTKENPVRLTPNYSVRKFFDAEHELALCEYFKKCALMFYGLTTRDCRQIAYEMAKINNVPLPDSWEKNKMAGIDWLRGFRERFPDMSLRKPENCSLARATAFNRETVKIFFVNLQNVLSRSPAFADGTRIYNLDETATSTVQKNPRVLAPKGRRNICKVSSGEKGWMNTEIFIEVMKHFVQRSGSTKDSPTVLIMDNHESHLSIEALDLAKESGVTVLTLHPHTSAKLQPLDVGIHGPFKSYYASAMESWMMRNPGCPVTIYEIGTLVGQAHDKCMTPVNIKNSFKKTGIYPFDRNIFSDEDFMPSSVTDRPAVVQPTDLVVDSNENTVPNQETEDINEMSNRDEDTPSPSVIDAIQQSIFESYVQGTSAASLPVTLSSEVCVTTPPALSQLCMAAIIEPVYAIPAVHSQDDYLEISHFSPPPSASRQDSNESSVRSLHAKVVVTPDEFRKPLKAAARSKNRKPRRLGKSLIATDTPEKDEIEKNKNAIKRKKIFQEKKATEKKASGKKAIRKVLQSDSEDDCEIVVNDDSPDEGSWLSDEEGNVNIITQESLMEPLPRNPREGDYVLVEFSSKRQLLYYVAKVLEERNDSLELYVSYLRHKKGRFSLPNTPDLAYVKDDNIKLLLPTPASGGSTARQQAYLTFSVDLSGINIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445079; iTF_00445078;
- 90% Identity
- iTF_00445078; iTF_00446061; iTF_00445079;
- 80% Identity
- -